Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03923 ATGAAGAGGTCCAGAGATGATGGTTACATGAACATGAGTTCACAACACAAACGGCCCATGGTGTCTTCTAGAGGAGAACCCTCGGGACAGCCCCAGATGATGAGTAGTGGTCAGAAATTAACCACAAATGATGCCTTAGCATATCTCAAGGCAGTAAAGGATATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTAAAGGAGCTGTTTAAGGGGCATAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAAGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGCAGAAGCTATACACTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGATCGTGTTTATAAGTCATTTCTAGACATATTGAATATGTACAGAAAGGAAACGAAGTCTATCTCCGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTTCTTGAGGAGTTTACACATTTTCTTCCTGATACTTCAGGAACAGCATCTACTCAGTATACTGCTGCTCGAAGTTCTCTCCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGACAAGAGAGATAGGACCATAGCTTCACATGGTGATTGTGACCTCAGTGTTGACCATCATGATCCAGAACATGACAGGGGTTTGACGAGGGCTGATAAGGAGCAGAGAAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAGAGAGAAAGGAGAGAACGGGAAAGGGATGATAGAGATTATGATCATGAAAGTAGTCGGGAGCGTTTATCCCACAAGCGAAAATTAGGTCGTAGGGCCGAGGAGCCGGGTGCTGAACCATTGCATGATGCAGATGAAAATTTTGGCTCGCGCCCTATCTCATCCACTTGTGATGATAAAAGTTCTTTGAAAAGTATGTGTAGTCAAGTGCTTGGTTTCCTAGAAAAAGTCAAGGAGAAATTAGGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATAACCCGACAAGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATGCTGATCTTATGGAGGGATTTAATGAGTTTTTGGCACAATGTGAGAAGAACGAAGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTGTGGAATGAAGGACATGGACTGAAACCAATGAAGGTTGAGGACAGGGATCGAGATCGTGATAGAGATGACGGGATGAAAGAAAGGGATCGTGAATTCCGAGAAAGAGACAAATCCACTACAATTTCCAGCAAGGATGTTTCAGTTCCTAAGATGTTTCTATATGCTGGCAAGGATAAGTATGTGGCAAAACCTATAAATGAGCTGGACCTTTCAAACTGTGAACGCTGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCTAATACCATCAGCTAGCCAGAGAACTGAACTTGGTGCAGAAGTACTGAATGATCACTGGGTTTCTGTTACTTCAGGAAGTGAGGATTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTAACGATTAAGCGAGTTGAAGAGCTCTTAGAAAAGATTAATGCTAATATAATCAAAGGAGACAGTCCGATTCGTATTGAGGAGCACTTAACAGCTCTAAACCTTCGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTGATGGATGTGTTAAGGAAGAATGCATCTTTAGCTTTACCAGTCATATTGATTCGCTTGAAGCAAAAGCAGGAAGACTGGGCAAGGTGCCGGGCTGATTTTAATAAAGTTTGGGCTGATATATATAAAAAGAACTATCATAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAAGATACGAAAAGCTTGAGCACTAAAGCCTTACTAGCAGAGATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCCATTCTTCCTAACTTGGAATTTGAGTATCCTGATCTGGAGATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAGTATGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTATAGAACCCATGCTTGGTGTTCCTTCTCGACCCCATGGTCCTGAGGATACTGAAGATGTTGTCAAGGCTAAGAATAATTCTGCCAAAAGTGGCACTGCAAGCATTGCTGAGGGTGATGGCACTCCTGGTGTTGGTGCTACCATAATGAATCCTAAGAATTTAAACACTAAAAGAAATGGGGACGAGATAGTTCCATTAGAACAATCAAATTCTTGCAAAGAATGGCAAACAAATGGGGATAGTGGGGTTAAAGAGGATAATTGTCTTGAATCAGACCGTTCTACCCATAAGACTGAAACTTTGGGAAGTAGTACACAGCAGGGTAAAATGAATATAAGCGCATCCATGCCTGATGAGCTATCAAGAGTAAATAAGCAAGATCATTCCATTGAACGGTTGATTAATAATGTCTCACTGTCCTCCGGAGTGGAGCAAAGTAATGGAAGAACAAATGTAGATAATGCATCAGGACTTACTACAACTCCATCGAGACCTGGTAATGTTTCTGGTGAGGGAGGCCTTGATTTACCTTCATCAGAGGATGAGGATGGTTTATCGTTTGCATGA 2847 0.412 MKRSRDDGYMNMSSQHKRPMVSSRGEPSGQPQMMSSGQKLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAIHFVGKIKTRFQGNDRVYKSFLDILNMYRKETKSISEVYQEVAALFQDHADLLEEFTHFLPDTSGTASTQYTAARSSLLRDRSSAMPTVRQMHVDKRDRTIASHGDCDLSVDHHDPEHDRGLTRADKEQRRRGEKEKDRREERERRERERDDRDYDHESSRERLSHKRKLGRRAEEPGAEPLHDADENFGSRPISSTCDDKSSLKSMCSQVLGFLEKVKEKLGNPEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYADLMEGFNEFLAQCEKNEGFLAGVMNKKSLWNEGHGLKPMKVEDRDRDRDRDDGMKERDREFRERDKSTTISSKDVSVPKMFLYAGKDKYVAKPINELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTIKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILIRLKQKQEDWARCRADFNKVWADIYKKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDLEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFIEPMLGVPSRPHGPEDTEDVVKAKNNSAKSGTASIAEGDGTPGVGATIMNPKNLNTKRNGDEIVPLEQSNSCKEWQTNGDSGVKEDNCLESDRSTHKTETLGSSTQQGKMNISASMPDELSRVNKQDHSIERLINNVSLSSGVEQSNGRTNVDNASGLTTTPSRPGNVSGEGGLDLPSSEDEDGLSFA. 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03923 948 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Seca11g03923 948 FunFam Paired amphipathic helix protein SIN3 332 406 - -
Seca11g03923 948 MobiDBLite consensus disorder prediction 832 870 - -
Seca11g03923 948 Gene3D Paired amphipathic helix 334 406 IPR036600 GO:0006355
Seca11g03923 948 SUPERFAMILY PAH2 domain 36 107 IPR036600 GO:0006355
Seca11g03923 948 Pfam Paired amphipathic helix repeat 148 191 IPR003822 GO:0006355
Seca11g03923 948 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Seca11g03923 948 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Seca11g03923 948 Coils Coil 256 276 - -
Seca11g03923 948 Pfam Sin3 family co-repressor 494 585 IPR013194 -
Seca11g03923 948 MobiDBLite consensus disorder prediction 222 318 - -
Seca11g03923 948 MobiDBLite consensus disorder prediction 1 38 - -
Seca11g03923 948 MobiDBLite consensus disorder prediction 785 819 - -
Seca11g03923 948 MobiDBLite consensus disorder prediction 205 333 - -
Seca11g03923 948 MobiDBLite consensus disorder prediction 901 948 - -
Seca11g03923 948 SMART hdac_interact2seq4b 492 592 IPR013194 -
Seca11g03923 948 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Seca11g03923 948 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Seca11g03923 948 MobiDBLite consensus disorder prediction 430 460 - -
Seca11g03923 948 Coils Coil 565 585 - -
Seca11g03923 948 SUPERFAMILY PAH2 domain 339 404 IPR036600 GO:0006355
Seca11g03923 948 MobiDBLite consensus disorder prediction 901 927 - -
Seca11g03923 948 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Seca11g03923 948 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Seca11g03923 948 SUPERFAMILY PAH2 domain 120 193 IPR036600 GO:0006355
Seca11g03923 948 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Seca11g03923 948 PANTHER SIN3B-RELATED 38 769 IPR039774 GO:0003714
Seca11g03923 948 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Seca11g03923 948 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03923 Seca-Chr11 103033167 103041386 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03923 40 120 WRKY Transcription Factor Family AT4G12020 65.432 6.34e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca11g03923 Sin3_corepress 5.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03923 K11644 - gmx:100781798 1425.61