Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03899 ATGGTTACCCGTTCTGCTTTGATGCTCCATCTCCATAACCCACCGATTTGCTACCAATTGTTCACTCACTTCACCCATGTTCACGCCTTTCTCCGCAACTCCACCTTGCCTCCTCTGTTCAGTATCACACCTCGCTTCTTTACTGTAACCCCTCCACGCCAAACGCAAACCAGAGCATTTGGAGAAGATTCCAAGGGAAGAGACACTTTCTTTGCAGAAGAAAACGTTGCGTGGACTTCACTTGATCTCTCTGATACCCTTTCTCGAGCTCTCTCTAACATTGGCCTCAAAAGACCCTCTCTCGTTCAGGCTTCTTCTATACCATCTGTGCTTTCAGGGAAGGATGTGATTATTGCAGCAGAGACTGGCAGTGGTAAGACATACAGTTACCTACTTCCTCTAATTCATAAGTTAGGGGACACCCATGAACATTCTCTAGATGCTGTATCTGATCAAGAAACCTCTCCACCTCGAAAAGTTTTGCTCGTTCTTTGTCCGAATGTGCAACTATGTGAGCAGGTAGTTAGGATGGCTAACAGTCTCTGTAGAGACAATGGTGAAACCATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATATTATTGTCACGACGCCTGCTGCTCTTCTTAATTACGTTGACCGTGATAGAACCCTCCGCATGGAATTTATGCGTGGTGTTAGATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTTCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTAAATCAAAAGAATCAGGAATGGCATTGCCAATGAAGCCAGAATACTCCTTGTCATCACACAATGCTTTGGAAGGTGAAGAGGAACTTCCAATTGAAGCCACCTCAGAAGAGGATGATGATGACAATGAGGATATTGTTGATATTAATAATGAAGCTGAATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGGAATATTGAGGCATATGTTTCCTGATGCTATGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGGAGCAAAGGTGGATAGAAGTTACAGTTGATACACAGGTGGATGAACTCATAAAGGCAGTGAATCACAGTTTCAGATCTGAAGATTTGGATAATGCGGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGTTATTGCACCGGTCTGGGATTGAATGTTTACGTTATCATAAAAATTGCACACTGGAAGAGCGAGCACATACCTTAGTTGATTTCCACAAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCTTACATGTTATTCAGGTATACTTCTTCTTTTACATGTTATAA 1500 0.4267 MVTRSALMLHLHNPPICYQLFTHFTHVHAFLRNSTLPPLFSITPRFFTVTPPRQTQTRAFGEDSKGRDTFFAEENVAWTSLDLSDTLSRALSNIGLKRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLLPLIHKLGDTHEHSLDAVSDQETSPPRKVLLVLCPNVQLCEQVVRMANSLCRDNGETIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDRDRTLRMEFMRGVRYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSKSKESGMALPMKPEYSLSSHNALEGEEELPIEATSEEDDDDNEDIVDINNEAESVKQRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGGILRHMFPDAMWVSGNYLHCHNPRLEQRWIEVTVDTQVDELIKAVNHSFRSEDLDNAGGIHRTMVFANTVEAVEAVAKLLHRSGIECLRYHKNCTLEERAHTLVDFHKKGGVLVCTDAAARGVDIPNVLHVIQVYFFFYML. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03899 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 499 IPR001650 -
Seca11g03899 499 Gene3D - 54 365 IPR027417 -
Seca11g03899 499 Pfam Helicase conserved C-terminal domain 419 492 IPR001650 -
Seca11g03899 499 SMART ultradead3 95 386 IPR014001 -
Seca11g03899 499 Pfam DEAD/DEAH box helicase 102 269 IPR011545 GO:0003676|GO:0005524
Seca11g03899 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 494 IPR027417 -
Seca11g03899 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 76 104 IPR014014 GO:0003724
Seca11g03899 499 SMART helicmild6 432 496 IPR001650 -
Seca11g03899 499 CDD DEADc 87 268 - -
Seca11g03899 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 492 - -
Seca11g03899 499 Gene3D - 371 495 IPR027417 -
Seca11g03899 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 367 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03899 Seca-Chr11 101722320 101727515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03899 50 261 Eukaryotic Initiation Factors Gene Family AT3G13920 26.638 2.05e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03899 - - ccaj:109797503 780.4