Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03870 ATGCCATTTGGTTTGGTCTCAGCTTGGAACAAGCGCAGAAGAAGCAAGTCCCAAGATCATTCAGACCCTTGGATTTATAAACCTGCTGAGTTTTGGCAACTTGAAGACCAAACACCACAACCTACAAAAAGGAGGCATGGATCATCTGTTTACACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGATAATCTTCTTGGAAAAGGAGGATTTGGCAGGGTCTACAGGGGTACTTTGCGGTCAGGAGAGGTAATAATATTTATGTGTCTCCTTTTGAAGGTTGTTGCAATCAAGAAAATGGAGCTGCCAGCAATTAAAGCAGCAGAGGGGGAGCGTGAATTCCGAGTAGAAGTTGACATATTGAGCAGGCTTGACCACCCAAATCTTGTTTCTTTGATTGGGTACTGTGCTGATGGGAAGCATAGATTTCTAGTGTATGAATATATGCTTAATGGGAACCTGCAAGATCATTTGAATGGAATCAGGGAAAGAAAAATGGATTGGCCTCTGAGACTCAAAGTGGCATTGGGAGCTGCAAAAGGGCTTGCTTATCTCCACTCAAGTTCTTGTGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAACATCCTTTTAAATGCCAATTTTGAAGCAAAGATATCAGATTTTGGGCTTGCCAAGCTAATGCCAGAAGGACAAGAGACACATGTGACTGCCAGGGTACTTGGTACCTTTGGATATTTTGACCCTGAGTATACATCGACTGGAAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACAGGACGCAGAGCTGTAGATCTAAACCAGGGTCCAAATGATCAAAACCTTGTTCTACAGGTGAGGCACCTACTGAATGACCGGAAGAAGCTCCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTGAGTCAATATTCATGTTTGCCAATCTGGCGTCACGATGTGTCCGAACTGAGAGTAACGAGAGACCTTCAATGGTAGATTGTGTCAAAGAAATACAGATGATTATCTATACAAATGCAAAAGGCTTGGGAATGGTTATGCATAGCCTGAGAATGGTCTAG 1116 0.4247 MPFGLVSAWNKRRRSKSQDHSDPWIYKPAEFWQLEDQTPQPTKRRHGSSVYTLKEMEEATCSFSDDNLLGKGGFGRVYRGTLRSGEVIIFMCLLLKVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMLNGNLQDHLNGIRERKMDWPLRLKVALGAAKGLAYLHSSSCVGIPIVHRDFKSTNILLNANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHLLNDRKKLRKVIDPEMARNSYTIESIFMFANLASRCVRTESNERPSMVDCVKEIQMIIYTNAKGLGMVMHSLRMV. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03870 371 FunFam receptor-like serine/threonine-protein kinase NCRK 152 362 - -
Seca11g03870 371 FunFam serine/threonine-protein kinase PBS1-like 31 151 - -
Seca11g03870 371 Pfam Protein tyrosine and serine/threonine kinase 67 349 IPR001245 GO:0004672|GO:0006468
Seca11g03870 371 ProSiteProfiles Protein kinase domain profile. 63 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03870 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Seca11g03870 371 Gene3D Phosphorylase Kinase; domain 1 31 151 - -
Seca11g03870 371 SUPERFAMILY Protein kinase-like (PK-like) 49 356 IPR011009 -
Seca11g03870 371 PANTHER OS01G0750732 PROTEIN 38 355 - -
Seca11g03870 371 ProSitePatterns Protein kinases ATP-binding region signature. 69 102 IPR017441 GO:0005524
Seca11g03870 371 Gene3D Transferase(Phosphotransferase) domain 1 152 362 - -
Seca11g03870 371 CDD STKc_IRAK 69 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03870 Seca-Chr11 100851536 100856189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03870 46 350 Receptor kinase-like Gene Family AT3G58690 45.484 9.18e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Seca11g03870 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03870 - - gmx:100820613 674.855