Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03863 ATGGGCGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTAGAATGTTACAATCAGGTTTGCCTTTAGATGACCGCCCTGAAGGTGCACGATCTCCTTCGCCTGAACCTATATATGACAATATGGGCATTAGGATTAACACTAGAGAGTATCGTGCGCGTGAGAGATTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAATCCCGCATTTAAGCCACCTGCAGATTATAGGCCGCCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACCGGCGCTAAAATTGTGATTCGAGGTAAAGGGTCGGTGAAAGAAGGCAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTTTTGGTGGAGGCAGAGACGCAGGAGTCTCTTGATGCTGCTGCAGGAATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCGGCCTTGAATGGGACCATTAGGGACGAAGAGTATTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGCCCTACAAGGACTTCGACGTTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTAGCAGAGCTGGGAGGTACAGTTCCTGAGTCTGCAACAAAGCAAACCACTACATTGGCAATTGGTTCAGGCAATTCCGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCTACTGGTGGGGCACCACAAGCTGGCTTAGGGGCTGCTGCAGCTAAAAAGGAAATTGATGACACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTATTTCAACAATTTGGCGAGATTGTTATGGCAAAAGTTATCAAGGATAGAATGTCTGGTTTAAGTAAAGGATACGGGTTTGTGAAGTATGCTGATGTCACAATGGCAAACAATGCAATCTTAGCCATGAATGGTTATCGCCTTGAGGGTCGAACTATTGCAGTCAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCTTCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATGCTGCCGGTGGCCCTCTTGCAAGTGCTCCCCCTGGGAGTTATGGTGCTACACCAGTCCCATGGGGGCCTCCTGTTCCTCCTCCATACGCACCTTATGCTCCTCCTCCACCTGGTTCAACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGAGTTCAATATCCTCCCGTCCAGACAGGCCCCCCTGGTGCCCCGTCCCAGCCTGCGACTTCTAGTGAAGCGCAGCAGAGTTACCCTCCTGGAGTGCAGTCTGACAATAGTACCTCTTCTCAGCCTGTACCAGCCAATATATATGGGAGCACAATACCTTCAATGCCACCGGCAGCTCAGCCTACATATCCTGCATCCTATGGATATCCGCCTTACTACAATGCATTACCTCCACCACCTCCCCCGGTCCCTGTCTCTTCAGACCAATCGCACAGTGTTGTAAATGCACCTTGGGCCAATAATCCTCTGGTTCCACCTCCCCCACCATCTGCAGAGAAGACAGCGTATGGTGCTGATCAATCCCAGAGCATTGGAAATGTGCCTTGGGCAGCAAATCCACCACTGCCTCCTCCTGCTTCATCAGCTGAGAAAACATCACATGGAGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 1968 0.4822 MGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTTTLAIGSGNSGSNPPWANNSGSTGGAPQAGLGAAAAKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADVTMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLASAPPGSYGATPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGAPSQPATSSEAQQSYPPGVQSDNSTSSQPVPANIYGSTIPSMPPAAQPTYPASYGYPPYYNALPPPPPPVPVSSDQSHSVVNAPWANNPLVPPPPPSAEKTAYGADQSQSIGNVPWAANPPLPPPASSAEKTSHGADSEYEKFMAEMK. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03863 655 FunFam splicing factor 1 213 266 - -
Seca11g03863 655 MobiDBLite consensus disorder prediction 508 549 - -
Seca11g03863 655 SMART kh_6 93 185 IPR004087 GO:0003676
Seca11g03863 655 MobiDBLite consensus disorder prediction 290 317 - -
Seca11g03863 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 408 IPR000504 GO:0003723
Seca11g03863 655 SUPERFAMILY RNA-binding domain, RBD 325 418 IPR035979 GO:0003676
Seca11g03863 655 MobiDBLite consensus disorder prediction 138 158 - -
Seca11g03863 655 Pfam Splicing factor 1 helix-hairpin domain 10 89 IPR032570 -
Seca11g03863 655 Gene3D - 299 412 IPR012677 -
Seca11g03863 655 ProSiteProfiles Type-1 KH domain profile. 108 180 - -
Seca11g03863 655 MobiDBLite consensus disorder prediction 481 549 - -
Seca11g03863 655 MobiDBLite consensus disorder prediction 641 655 - -
Seca11g03863 655 ProSiteProfiles Zinc finger CCHC-type profile. 215 229 IPR001878 GO:0003676|GO:0008270
Seca11g03863 655 SMART c2hcfinal6 240 256 IPR001878 GO:0003676|GO:0008270
Seca11g03863 655 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Seca11g03863 655 FunFam splicing factor-like protein 1 85 213 - -
Seca11g03863 655 CDD KH-I_BBP 92 185 - -
Seca11g03863 655 Pfam KH domain 108 156 IPR004088 GO:0003723
Seca11g03863 655 SMART rrm1_1 331 404 IPR000504 GO:0003723
Seca11g03863 655 Gene3D - 7 85 IPR047086 -
Seca11g03863 655 ProSiteProfiles Zinc finger CCHC-type profile. 241 255 IPR001878 GO:0003676|GO:0008270
Seca11g03863 655 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 93 219 IPR036612 GO:0003723
Seca11g03863 655 Gene3D K Homology domain, type 1 90 212 IPR036612 GO:0003723
Seca11g03863 655 PANTHER RNA-BINDING PROTEIN RELATED 4 489 IPR045071 -
Seca11g03863 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 401 IPR000504 GO:0003723
Seca11g03863 655 FunFam splicing factor-like protein 1 310 412 - -
Seca11g03863 655 SUPERFAMILY Retrovirus zinc finger-like domains 211 257 IPR036875 GO:0003676|GO:0008270
Seca11g03863 655 Gene3D - 213 266 - -
Seca11g03863 655 MobiDBLite consensus disorder prediction 290 313 - -
Seca11g03863 655 MobiDBLite consensus disorder prediction 481 507 - -
Seca11g03863 655 MobiDBLite consensus disorder prediction 574 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03863 Seca-Chr11 100539331 100544943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03863 330 521 Eukaryotic Initiation Factors Gene Family AT3G16380 26.829 2.23e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03863 K13095 - gmx:100800982 1017.68