Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03841 ATGGGGCATATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTCTCCTCCTACATTGCTCAACATGGCACTCGCAACTGGCAGCTCACCTAG 123 0.5041 MGHIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWQLT. 41
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03841 40 Pfam Myb-like DNA-binding domain 14 38 IPR001005 -
Seca11g03841 40 CDD SANT 17 39 IPR001005 -
Seca11g03841 40 SUPERFAMILY Homeodomain-like 8 38 IPR009057 -
Seca11g03841 40 PANTHER F14D16.11-RELATED 1 39 - -
Seca11g03841 40 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 40 IPR017930 -
Seca11g03841 40 Gene3D - 6 40 - -
Seca11g03841 40 ProSiteProfiles Myb-like domain profile. 9 40 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03841 Seca-Chr11 100235822 100235944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03841 1 39 MYB Transcription Factor Family AT5G56110 89.744 1.42e-21 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g03841 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03841 K09422 - fve:101295315 87.4261