LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03834	ATGAAAATGGTGAGTGAACCCCTTCACAATCCACCACCGATGGAAGAAGAAGAAGATGAAGTAAAAGCAGAGCAACTAAACAACGCTGCTTCTCAGGACGACGACGTTTCGGAGAGGAAAAACACTGAAGAGGAAGTGGTTCATGCAATGAAACGGGTTGAAGTGGGCCCGACGCCGTTCCTGAAGAAGACATTCGAAATGGTGGAGGATCCGAACACCGACCCGATTGTGTCATGGGGCGAAGCTCATCACAGCTTCGTGATTTGGGATTCTCACCAATTCTCCAAAACCCTTCTCCCTAAGTATTTCAAACACAGCAACTTCTCTAGCTTCATTCGCCAGCTCAACACCTACGGCTTTAAGAAGGTTGACTCAGATCGTTGGGAGTTTGCAAATGAAAGGTTCAAGGGAGGGAAGAAGCATTTGCTCAAGAGCATTAAGAGGAGAAGTGGCAACTGTAAAAAACTACCTCGAGTTAGAGCAGCATTCAACTCTATGAAGCCTGGCGTTGAGTATGAAGTTGAGCAGCTCAAAAAAGATCAGAACATGTTAAGAGTGGAGATTCTGAATTTGACACAGCAGAATGAGGGTTTGAAGATTCAGCTCACCAATGTTGAGGAGCAAGTTCGATGTGCAGAGTTGAAGCAGTATAAGATGCTGGTTTTCCTCACCAGAATGGCCAAAAACCCTACTTTTGTTCAGCAGCTAATCCACGTTGTTAAGAGACACAGATTGTTGGCAACACAGTGCCCTGTAAGCTTCCCTAAGGGCAAGGACACAATCCCACATGTTGATTGTAAACACAAAGGGTATGAACAATTGGATACATTGCTTTCTGAGAGTGTGAACATTAGAAGGATGGACCCCACAGTTCCCTCTCCTCAGGAAGGTGATGATTTATGCAGCTCTGTAACAGGCTCAAGGACCATTGGTTCTGGAGCAAGCATGCATGATGTATCCTATGCTTATGATGTTATGTCAGAAAAACTAATGGGGGAGAGTTCTGTTGTTGAAGTAGATGTGAATGTAACAAATATTTATCATGAGTTAGAGGATTTGATAAGGAAACAAGATGGAAGTAGATTGGTGGGGCAAAGTAGCTGA	1104	0.442	MKMVSEPLHNPPPMEEEEDEVKAEQLNNAASQDDDVSERKNTEEEVVHAMKRVEVGPTPFLKKTFEMVEDPNTDPIVSWGEAHHSFVIWDSHQFSKTLLPKYFKHSNFSSFIRQLNTYGFKKVDSDRWEFANERFKGGKKHLLKSIKRRSGNCKKLPRVRAAFNSMKPGVEYEVEQLKKDQNMLRVEILNLTQQNEGLKIQLTNVEEQVRCAELKQYKMLVFLTRMAKNPTFVQQLIHVVKRHRLLATQCPVSFPKGKDTIPHVDCKHKGYEQLDTLLSESVNIRRMDPTVPSPQEGDDLCSSVTGSRTIGSGASMHDVSYAYDVMSEKLMGESSVVEVDVNVTNIYHELEDLIRKQDGSRLVGQSS.	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g03834	367	PRINTS	Heat shock factor (HSF) domain signature	111	123	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g03834	367	PRINTS	Heat shock factor (HSF) domain signature	98	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g03834	367	PRINTS	Heat shock factor (HSF) domain signature	60	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g03834	367	Coils	Coil	174	215	-	-
	Seca11g03834	367	SMART	hsfneu3	56	149	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g03834	367	SUPERFAMILY	"Winged helix" DNA-binding domain	56	149	IPR036390	-
	Seca11g03834	367	FunFam	Heat shock transcription factor 1	53	150	-	-
	Seca11g03834	367	Pfam	HSF-type DNA-binding	60	149	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g03834	367	Gene3D	-	53	150	IPR036388	-
	Seca11g03834	367	ProSitePatterns	HSF-type DNA-binding domain signature.	99	123	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g03834	367	MobiDBLite	consensus disorder prediction	1	45	-	-
	Seca11g03834	367	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	54	258	IPR027725	-
	Seca11g03834	367	Coils	Coil	14	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03834	Seca-Chr11	100060310	100062821	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03834	54	246	HSF	AT2G26150	51.269	3.67e-65	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca11g03834		HSF_DNA-bind	4.6e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03834	K09419		-	gmx:100818430	374.015