Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03824 ATGTATTGGGTTCACCCTCAAATCTGCCATAGCAGTGATGCAATCAACAGCCTCACTGTTATTTCCCCATCTTCTTGTTCTTCTTGTTCTTCCTCCGCATCATTGCCTTATGGTGGTTCTGACTACAAGAAACAATTAGCCCCACCTCTAGCTTCTTCATCTGGCATTAGAATGAGCCCTGCAGTTGTTTTCATCATAGTCATTTTAGCTATTGTATTTTTCATCTCTGGTATCCTTCAATTGCTTGTTAGATTTCTCATCAGGCAGAGGTCCTCTTCATCAATTTCTCAATCCAGTAGATTCCCTGACATGTCTGAATCTGATCCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCAGGCCTAGATCAGGCTTTCATAGATGCTCTCCCAGTTTTCTTTTATGAAGAGATAATAGGTTTAAAAGATCCTTTTGATTGTGCTGTTTGCCTTTGCCAATTCTCAGAACAAGACATGCTCAGATTGCTGCCTATTTGTAATCATGCTTTTCACATTGATTGCATAGACACGTGGCTTCTGTCTAATTCAACTTGTCCTCTCTGTAGAAGGAGTCTTTATGAACCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTAAGGGATGAAGATGGGGTTTCAGGCAGTGTTGTTGGTGAGGCTGCTTCTATTAACAAACATTCAGAGAATCACATAATGAGTGGTAAAAGGGTGTTTTCTGTCAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGAGGGGGTGGAAAGAGGTGAAGGAGAGAGCAGCAGTACAAGTATTGTAGATGTTAGAAGATGCTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCCAATAGAGGTGATGGAGCAGGTAGTACCAGTGGCAGTATGAGACAATTGAAAGGGAGATTAGTCCAATATGATAATTCTTCCACTGAAGGTGATGTTGAGGGAAAGAAAGTCAACATTGCTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAGGAAGGATAAGGTATCAAATAATTCACTAGAACCCCAATTGGGTAATTCTAATGTCACTGCAACTTTGCCATAG 1137 0.4107 MYWVHPQICHSSDAINSLTVISPSSCSSCSSSASLPYGGSDYKKQLAPPLASSSGIRMSPAVVFIIVILAIVFFISGILQLLVRFLIRQRSSSSISQSSRFPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFFYEEIIGLKDPFDCAVCLCQFSEQDMLRLLPICNHAFHIDCIDTWLLSNSTCPLCRRSLYEPGFAFENPVYDFEGLRDEDGVSGSVVGEAASINKHSENHIMSGKRVFSVRLGKFRSSNNGEGVERGEGESSSTSIVDVRRCYSMGSFQYVVADSDLQVALCPNRGDGAGSTSGSMRQLKGRLVQYDNSSTEGDVEGKKVNIARKGESFSVSKIWLWSRKDKVSNNSLEPQLGNSNVTATLP. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03824 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 197 IPR013083 -
Seca11g03824 378 FunFam RING-H2 finger protein ATL46 112 197 - -
Seca11g03824 378 CDD RING-H2_EL5-like 149 192 - -
Seca11g03824 378 Pfam Ring finger domain 149 192 IPR001841 -
Seca11g03824 378 SUPERFAMILY RING/U-box 129 198 - -
Seca11g03824 378 SMART ring_2 150 191 IPR001841 -
Seca11g03824 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 351 - -
Seca11g03824 378 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03824 Seca-Chr11 99575988 99577124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03824 77 358 C3H Transcription Factor Family AT2G18650 39.355 9.86e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03824 - - gmx:100818135 542.732