Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03806 ATGTCTCGGATTTATGTTGGGAATTTGGACCCTCGAGTCACTGAAAGGGATCTCGAAGATGAATTTCGTTTGTACGGTGTTCTCCGGAGTGTCTGGGTTGCTCGCAGACCACCAGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCGATTCATGCCTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGAGGCCGAGGTGGGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAATGTCGCATGCGCATTGGTTCACGAGACGTAGGAAGTGGAAGGAGGCGAAGTCCTAGTCGTCGCAGAAGTCCAAGTTATGGGTATGGCCGCAGGAGTTATAGCCCTCATGGGAGAAGATCTCCAAGAAGACGTAGCATAACCCCTCCTCCACGTGGTCGCAGCTACAGCAGGTCCCCTCAGTACCGTCATTCTCGCCGTGATTCACCTTATGCCAATGGAGATTAA 531 0.5104 MSRIYVGNLDPRVTERDLEDEFRLYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGRGRGGEDLKCYECGEPGHFARECRMRIGSRDVGSGRRRSPSRRRSPSYGYGRRSYSPHGRRSPRRRSITPPPRGRSYSRSPQYRHSRRDSPYANGD. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03806 176 CDD RRM_SRSF3_like 3 71 - -
Seca11g03806 176 Gene3D - 77 147 - -
Seca11g03806 176 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Seca11g03806 176 MobiDBLite consensus disorder prediction 110 176 - -
Seca11g03806 176 SUPERFAMILY Retrovirus zinc finger-like domains 79 106 IPR036875 GO:0003676|GO:0008270
Seca11g03806 176 SMART rrm1_1 3 69 IPR000504 GO:0003723
Seca11g03806 176 MobiDBLite consensus disorder prediction 162 176 - -
Seca11g03806 176 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Seca11g03806 176 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 77 147 - -
Seca11g03806 176 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Seca11g03806 176 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 165 - -
Seca11g03806 176 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Seca11g03806 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Seca11g03806 176 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Seca11g03806 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Seca11g03806 176 Gene3D - 1 73 IPR012677 -
Seca11g03806 176 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03806 Seca-Chr11 98854901 98859163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03806 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 43.548 4.99e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03806 K12896 - jre:109019839 226.868