Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03800 ATGTCACCATCCAGAAATGAATCTTCCAATTCAGTTGAAACAAGAGCTGATCCTTCTGGTACTGAAACCCATGTTCAGAAATTGGTTGAGGACTTGAAGAGCACTTCTCTTGGTAATCAGAGGGAGGCAATAGCTGAACTCCGCCTTCTTTCTAAGCACAACACGGATAACCGAATTGTTATTTCAAATTGTGGGGCCATTGCCTTATTAGTTTATTTGCTTCAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAACACTTTTTAACTTGTCAATAAATGATAACAACAAAACAGCAATTGCAGATGCTGGTGCAATTGGACCTTTGATTCATGTCCTTTTAGCTTATCAGTTGTTGAGGGAAACAAGATCAAGATAG 384 0.3828 MSPSRNESSNSVETRADPSGTETHVQKLVEDLKSTSLGNQREAIAELRLLSKHNTDNRIVISNCGAIALLVYLLQSTDTTIQENSVTTLFNLSINDNNKTAIADAGAIGPLIHVLLAYQLLRETRSR. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03800 127 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g03800 127 Gene3D - 8 123 IPR011989 -
Seca11g03800 127 SUPERFAMILY ARM repeat 24 115 IPR016024 -
Seca11g03800 127 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 65 107 IPR000225 GO:0005515
Seca11g03800 127 Pfam Armadillo/beta-catenin-like repeat 54 93 IPR000225 GO:0005515
Seca11g03800 127 SMART arm_5 54 94 IPR000225 GO:0005515
Seca11g03800 127 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g03800 127 PANTHER U BOX DOMAIN-CONTAINING 10 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03800 Seca-Chr11 98518359 98518742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03800 4 115 U-box Gene Family AT2G23140 71.429 4.03e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03800 - - pvy:116125622 153.68