Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03799 ATGTACTCAGAACCTGTATCAAAGTATTACCAAAAGGCAGAGAAGGTGCTTAAGGTGTTGAAGCCAATTATTGATGATGCTACTGTTTATTCTGATTTAGCTTCTAATGAAGTGCTTACTGAGCTAATCGAGGATCTTGGTCTAGCTGTTGAGGAGTTGAGGGAGCTTATTGAGAATTGGAATATATTATCTAGCAAATTTTACTTTGTTATGCAAGTTGAACCACTGGTATCAAGAATTCAGGTTTCAGGGCTCAATATTTTACAGCAACTGAAGGTTTCACAGCAGTGTCTCCCTGATGATTTGGAACCTGAAACATCATCTGCCATTAAAGAAGCTATTGTGGAACAACTGGACGGTGTAGGACCCAGTCCAGAGGTCCTAGCAAAGATTGCTGAGAACCTGGGCCTCAGGTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGATTGCTGAACAAACTGAAAAAACTACAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAAATTGTATGCATGAGCACCTTGTTATGCTTAAGCAATCTCAGAGCTCTATCCCAGAGTCAGTTCCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATCGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGTCTCTGGTTCGCACCAACCTAATACCTAATTACACTGTAAAGGCATTAATGGCAAACTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAATCCACAAACTTAAATCAACCATCTCTCCTTCGTGGGTCTATGGAGTCTGATTCAGCCAAGGAACTGCCTGTTGCATCACCGAATGGTGGAATCCACCAAGAGGGAACATCATCACTGCATCCCCATTCAACTCCAGCAGGTACCTTGGGTGGCATGGTTAATGGGCAGCATGTGGATCTTGTAAAAATATCACCCACAGATTCAGATGATGGGTCTTCCAGCTCAGTTGAAGGGAGTATGGATTCAGTTGACTTGACCAGAAATGAATCTTCCAATGCCTTGAGCTCAAAACAATCTCAAACCCATATTAGAACTGGTTCTGATTCCACTGCACTCTCTAATGCAAATTTTGCTCAAGGTACACAAGGTGATAACAACAGTGCTCCTCAACTGTCATCCAGTCCAGTCAACAATGAAGATAGTTCTGGGGAATTAAATGCTGCTGCCATGCCAACTCCAAATAGAGAGCCTGAGTTTTCACCCCATTTGGTGGAGCCAAGGTCTCAAAACCAAACTGTACCGCGACGGTCATTAGAGAGATTTGTTCCAATTCCAAGGATAGTGTCATTTCCCTCTGTTGAAACAAGAGCTGATCCTTCTGTTGATTTGCTTCAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAGCACTTCTTAACTTGTCAATCAATGATAACAACATAACAGCAATTGCAGATGCTGGTGCTGGTGCAATTGGACCTTTGATTCATGTCCTTAAGACAGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGGGCAAGAAATTAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGACTGGATTGTGCAAGCTGGTGCAATCAAGAACCTTGTAGAGTTAATGGATCCCGCCGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAAGTTGTGGAGTTGGGTTCTGCAAGATTCTTAAACATAGTACTGCAAGAAGGAGCTGTGCCCCCATTAGTAGCATTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGAAGCCAAAGACATGGTGGTGCTGGGAGGGCTTGATTTTGAATACCAAATCTCTTGAGCCATGCTGA 2025 0.4316 MYSEPVSKYYQKAEKVLKVLKPIIDDATVYSDLASNEVLTELIEDLGLAVEELRELIENWNILSSKFYFVMQVEPLVSRIQVSGLNILQQLKVSQQCLPDDLEPETSSAIKEAIVEQLDGVGPSPEVLAKIAENLGLRSNQEVLIEAVALERLKEIAEQTEKTTEAEYIDQMISVVNCMHEHLVMLKQSQSSIPESVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQSLVRTNLIPNYTVKALMANWCESNNVKLVDPIKSTNLNQPSLLRGSMESDSAKELPVASPNGGIHQEGTSSLHPHSTPAGTLGGMVNGQHVDLVKISPTDSDDGSSSSVEGSMDSVDLTRNESSNALSSKQSQTHIRTGSDSTALSNANFAQGTQGDNNSAPQLSSSPVNNEDSSGELNAAAMPTPNREPEFSPHLVEPRSQNQTVPRRSLERFVPIPRIVSFPSVETRADPSVDLLQSTDTTIQENSVTALLNLSINDNNITAIADAGAGAIGPLIHVLKTGSPEAKENSAATLFSLSGQEIKDAATALFNLSIFHENKDWIVQAGAIKNLVELMDPAAGMVDKAVAVLANLATIPEGRRAIGQEGGIPVLVEVVELGSARFLNIVLQEGAVPPLVALSQSGTPRAKEKKPKTWWCWEGLILNTKSLEPC. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03799 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 276 IPR013083 -
Seca11g03799 674 Gene3D - 547 654 IPR011989 -
Seca11g03799 674 FunFam RING-type E3 ubiquitin transferase 196 271 - -
Seca11g03799 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 570 611 IPR000225 GO:0005515
Seca11g03799 674 Coils Coil 36 63 - -
Seca11g03799 674 MobiDBLite consensus disorder prediction 342 424 - -
Seca11g03799 674 SMART arm_5 501 543 IPR000225 GO:0005515
Seca11g03799 674 SMART arm_5 559 598 IPR000225 GO:0005515
Seca11g03799 674 MobiDBLite consensus disorder prediction 280 453 - -
Seca11g03799 674 ProSiteProfiles U-box domain profile. 196 270 IPR003613 GO:0004842|GO:0016567
Seca11g03799 674 Gene3D - 474 546 IPR011989 -
Seca11g03799 674 SUPERFAMILY RING/U-box 185 274 - -
Seca11g03799 674 SUPERFAMILY ARM repeat 478 650 IPR016024 -
Seca11g03799 674 MobiDBLite consensus disorder prediction 306 320 - -
Seca11g03799 674 CDD RING-Ubox_PUB 198 250 IPR045210 -
Seca11g03799 674 SMART Ubox_2 200 263 IPR003613 GO:0004842|GO:0016567
Seca11g03799 674 Pfam U-box domain 197 267 IPR003613 GO:0004842|GO:0016567
Seca11g03799 674 PANTHER U BOX DOMAIN-CONTAINING 5 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03799 Seca-Chr11 98488477 98491536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03799 156 653 U-box Gene Family AT2G23140 46.805 1.13e-148 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03799 - - gmx:100777715 793.112