Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03788 ATGCAAGTTGAACCACTGGTATCAAGAATTCAGGTTTCAGGGCTCAATATTTTACAGCAACTGAAGGTTTCACAGCAGTGTCTCCCTGATGATTTGGAACCTGAAACATCATCTGCCATTAAAGAAGCTATTGTGGAACAACTGGACGGTGTAGGACCCAGTCCAGAGGTCCTAGCAAAGATTGCTGAGAACCTGGGCCTCAGGTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGATTGCTGAACAAACTGAAAAAACTACAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAAATTGTATGCATGAGCACCTTGTTATGCTTAAGCAATCTCAGAGCTCTATCCCAGAGTCAGTTCCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATCGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGTCTCTGGTTCGCACCAACCTAATACCTAATTACACTGTAAAGGCATTAATGGCAAACTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAATCCACAAACTTAAATCAACCATCTCTCCTTCGTGGGTCTATGGAGTCTGATTCAGCCAAGGAACTGCCTGTTGCATCACCGAATGGTGGAATCCACCAAGAGGGAACATCATCACTGCATCCCCATTCAACTCCAGCAGGTACCTTGGGTGGCATGGTTAATGGGCAGCATGTGGATCTTGTAAAAATATCACCCACAGATTCAGATGATGGGTCTTCCAGCTCAGTTGAAGGGAGTATGGATTCAGTTGACTTGACCAGAAATGAATCTTCCAATGCCTTGAGCTCAAAACAATCTCAAACCCATATTAGAACTGGTTCTGATTCCACTGCACTCTCTAATGCAAATTTTGCTCAAGGTACACAAGGTGATAACAACAGTGCTCCTCAACTGTCATCCAGTCCAGTCAACAATGAAGATAGTTCTGGGGAATTAAATGCTGCTGCCATGCCAACTCCAAATAGAGAGCCTGAGTTTTCACCCCATTTGGTGGAGCCAAGGTCTCAAAACCAAACTGTACCGCGACGGTCATTAGAGAGATTTGTTCCAATTCCAAGGATAGTGTCATTTCCCTCTGTTGAAACAAGAGCTGATCCTTCTGTTGATTTGCTTCAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAGCACTTCTTAACTTGTCAATCAATGATAACAACATAACAGCAATTGCAGATGCTGGTGCTGGTGCAATTGGACCTTTGATTCATGTCCTTAAGACAGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGGGCAAGAAATTAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGACTGGATTGTGCAAGCTGGTGCAATCAAGAACCTTGTAGAGTTAATGGATCCCGCCGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAAGTTGTGGAGTTGGGTTCTGCAAGATTCTTAAACATAGTACTGCAAGAAGGAGCTGTGCCCCCATTAGTAGCATTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGAAGCCAAAGACATGGTGGTGCTGGGAGGGCTTGATTTTGAATACCAAATCTCTTGAGCCATGCTGA 1815 0.4397 MQVEPLVSRIQVSGLNILQQLKVSQQCLPDDLEPETSSAIKEAIVEQLDGVGPSPEVLAKIAENLGLRSNQEVLIEAVALERLKEIAEQTEKTTEAEYIDQMISVVNCMHEHLVMLKQSQSSIPESVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQSLVRTNLIPNYTVKALMANWCESNNVKLVDPIKSTNLNQPSLLRGSMESDSAKELPVASPNGGIHQEGTSSLHPHSTPAGTLGGMVNGQHVDLVKISPTDSDDGSSSSVEGSMDSVDLTRNESSNALSSKQSQTHIRTGSDSTALSNANFAQGTQGDNNSAPQLSSSPVNNEDSSGELNAAAMPTPNREPEFSPHLVEPRSQNQTVPRRSLERFVPIPRIVSFPSVETRADPSVDLLQSTDTTIQENSVTALLNLSINDNNITAIADAGAGAIGPLIHVLKTGSPEAKENSAATLFSLSGQEIKDAATALFNLSIFHENKDWIVQAGAIKNLVELMDPAAGMVDKAVAVLANLATIPEGRRAIGQEGGIPVLVEVVELGSARFLNIVLQEGAVPPLVALSQSGTPRAKEKKPKTWWCWEGLILNTKSLEPC. 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03788 604 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 541 IPR000225 GO:0005515
Seca11g03788 604 FunFam RING-type E3 ubiquitin transferase 126 201 - -
Seca11g03788 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 206 IPR013083 -
Seca11g03788 604 PANTHER U BOX DOMAIN-CONTAINING 26 583 - -
Seca11g03788 604 MobiDBLite consensus disorder prediction 272 354 - -
Seca11g03788 604 CDD RING-Ubox_PUB 128 180 IPR045210 -
Seca11g03788 604 ProSiteProfiles U-box domain profile. 126 200 IPR003613 GO:0004842|GO:0016567
Seca11g03788 604 SMART Ubox_2 130 193 IPR003613 GO:0004842|GO:0016567
Seca11g03788 604 MobiDBLite consensus disorder prediction 236 250 - -
Seca11g03788 604 Pfam U-box domain 127 197 IPR003613 GO:0004842|GO:0016567
Seca11g03788 604 Gene3D - 476 584 IPR011989 -
Seca11g03788 604 Gene3D - 404 475 IPR011989 -
Seca11g03788 604 SUPERFAMILY RING/U-box 115 204 - -
Seca11g03788 604 MobiDBLite consensus disorder prediction 210 383 - -
Seca11g03788 604 SMART arm_5 431 473 IPR000225 GO:0005515
Seca11g03788 604 SMART arm_5 489 528 IPR000225 GO:0005515
Seca11g03788 604 SUPERFAMILY ARM repeat 408 580 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03788 Seca-Chr11 98424403 98426572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03788 86 583 U-box Gene Family AT2G23140 46.805 9.21e-150 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03788 - - gmx:100777715 697.197