Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03787 ATGGCTTCTTCAATGAGGATCTCAAGGCTCATCTCTCGCTCATTTTCTTCTTCTACCTCCTTGTTTTCTCGAGGTGGGAATGGTTACCTGGGTGGCAGACTCAGTAAATACAGCACTGCTGCTGCCATTGAACAAGAACCCATTAAACCATCAGTGCAAGTAGAACATACCCAGCTCTTAATTGATGGGAAATTCGTAGATGCTGCTTCTGGGAAAACTTTTCCAACGTTGGATCCTAGGACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACGCTGAAGATGTTGATCGTGCAGTTGCAGCTGCACGCAAAGCATTCGATCAAGGGCCATGGCCTAAGATGCCAGCCTATGAAAGGCAAAGGATATTGTTGCGTGCTGCTGATCTGTTGGAAAAGCATAATGATGAGCTTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCTCAGATTGAAATTCCAATGCTGGTTCGCCTATTTCGTTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGACCACACCATGTGCAAACACTGCATGAACCCATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTGGGACCTGCTTTGGCTTGTGGAAACTCTATTGTTCTGAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGCGGCAAAACTACTTCATGAGGCTGGACTTCCTCCTGGTGTTTTGAATATAGTATCTGGCTTTGGTCCAACTGCTGGTGCTGCACTTGCTAGTCACATGGATGTTGATAAGCTTGCCTTTACTGGTTCAACTGATACTGGAAAAGTTGTCCTTGAACTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTATGTGAAGATGCTGATGTTGATCAGGCTGTTGAGCTAGCACACTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTCGAACATTTGTACATGAACGTGTATATGATGAGTTTGTTGAGAAAGCAAAGGCTAGAGCGTTAAAACGTATTGTTGGTGATCCATTCAAGGCAGGAATAGAGCAAGGTCCTCAGATTGATTCAGATCAATTTGAGAAAATACTGAGGTATATCAAATCTGGTGTTCAAAATGGGGCTACCCTTGAAACTGGAGGAGATAGGCTTGGCAGCAAAGGCTTCTATATTCAGCCTACTGTCTTCTCAAATGTCCAGGATAACATGCTGATTGCAAAGGAAGAGATCTTTGGTCCAGTGCAATCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACACTCGTTATGGCCTTGCAGCAGGGATATTCACACAGAACATAGACACTGCCAATACATTGACTCGAGCATTGAGGGTTGGAACAGTATGGGTAAATACCTTTGATACATTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGTGGGCAGGGCAGAGAAAAAGGAGAGTACAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTGACTCCCTTGAAAAACCCTGCATGGCTTTGA 1614 0.4436 MASSMRISRLISRSFSSSTSLFSRGGNGYLGGRLSKYSTAAAIEQEPIKPSVQVEHTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHAEDVDRAVAAARKAFDQGPWPKMPAYERQRILLRAADLLEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKAGIEQGPQIDSDQFEKILRYIKSGVQNGATLETGGDRLGSKGFYIQPTVFSNVQDNMLIAKEEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGIFTQNIDTANTLTRALRVGTVWVNTFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03787 537 FunFam Aldehyde dehydrogenase, putative 499 525 - -
Seca11g03787 537 CDD ALDH_F2BC 54 529 - -
Seca11g03787 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 71 527 IPR016162 GO:0016491
Seca11g03787 537 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 61 316 - -
Seca11g03787 537 SUPERFAMILY ALDH-like 52 531 IPR016161 GO:0016491
Seca11g03787 537 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 303 310 IPR029510 GO:0016491
Seca11g03787 537 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 41 527 - -
Seca11g03787 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 331 342 IPR016160 GO:0016491
Seca11g03787 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620
Seca11g03787 537 FunFam Mitochondrial aldehyde dehydrogenase 2 309 498 - -
Seca11g03787 537 Pfam Aldehyde dehydrogenase family 65 527 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03787 Seca-Chr11 98222946 98226376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03787 3 537 Aldehyde Dehydrogenase Gene Family AT3G48000 77.840 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03787 K00128 - gmx:100777399 977.237