Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03774 ATGACGACCCGCTTCAAGAAGAACCGTAAGAAGCGTGGTCACGTGAGCGCCGGCCACGGTCGCATTGGAAAGCACCGGAAGCACCCTGGTGGTAGGGGAAACGCCGGTGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCTGGGTACTTTGGTAAAGTTGGTATGCGTTACTTCCACAAGCTCCGCAACAAGTTCTACTGCCCCACCGTTAACATCGACAAGCTCTGGTCACTACTCCCTCAAGAGGTTAAGGACAAAGCCTCTAAGTCCAAGGACACCGCGCCCTTAATCGATGTCACCCAGTTTGGATACTTCAAGGTTCTTGGCAAAGGTGTTCTTCCTGAGAATCAGCCACTTGTCATCAAGGCTAAGCTTATCTCCAAGATCGCTGAGAAGAAGATCAAAGAGGCCGGTGGTGCCGTCGTCCTTACTGCTTAG 447 0.528 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPTVNIDKLWSLLPQEVKDKASKSKDTAPLIDVTQFGYFKVLGKGVLPENQPLVIKAKLISKIAEKKIKEAGGAVVLTA. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03774 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Seca11g03774 148 FunFam 60S ribosomal protein L27a 58 148 - -
Seca11g03774 148 Gene3D - 58 148 - -
Seca11g03774 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Seca11g03774 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 145 IPR021131 -
Seca11g03774 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Seca11g03774 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Seca11g03774 148 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03774 Seca-Chr11 97261887 97262333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03774 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.486 2.59e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03774 K02900 - tcc:18603983 276.559