Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03760 ATGGTGAAATCAAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGTTCGTGGGTTTCTGAGATTCGCCATCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCAAGAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGGAATGCCAAAACAAACTTCCCAGTTGCTGATCACAACCCAATGGGGAATCACAGTTGTGCCTCTTCTTCTTCTTCAACAACATTGTCTGCAGTTCTGAGTGCAAAGCTAAGGAAATGTTGCAAGTCCCCTTCACCTTCCCTCACTTGCCTAAGGCTTGACACTGAGAATTCTCACTTTGGGGTGTGGCAGAAGAGAGCAGGACCTCGTTCTGACTCAAACTGGATCATGATGGTTGAGTTGGAAAGGAAGAAAGAGGAAACTTGTGATGATTCATCAAAATTGCCTGATGCCCCTGATGATGATGATGATGACAAGGTAAAATCAGAGGAAGTCAATGCCAATGTCAATGTCAATGGTTTGGACGATGAACAAAGGATTGCTCTTCAGATGATAGAGGAACTTCTGAATAGGAATTGA 585 0.4427 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVADHNPMGNHSCASSSSSTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELERKKEETCDDSSKLPDAPDDDDDDKVKSEEVNANVNVNGLDDEQRIALQMIEELLNRN. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03760 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Seca11g03760 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 151 - -
Seca11g03760 194 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Seca11g03760 194 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Seca11g03760 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Seca11g03760 194 MobiDBLite consensus disorder prediction 141 169 - -
Seca11g03760 194 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Seca11g03760 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca11g03760 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Seca11g03760 194 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Seca11g03760 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Seca11g03760 194 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03760 Seca-Chr11 96933333 96934247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03760 1 194 AP2-EREBP Transcription Factor Family AT1G15360 61.538 1.50e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g03760 AP2 8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03760 - - gmx:100796962 266.544