Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03753 ATGGCAAGCTTGAGTTTCTTAGACTTATCCCAAAATCTTTTGACTGGTGTGATTCCAAAATCCTTAGAATCACTTTCTTATCTTCAATACATTAACTTTTCATACAATAGATTACAAGGAGAGATTCCTGATGGTGGACCTTTCATAAATTTCACAGCTTCATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCACGCCTACAGGTACCTCCATGTGATAAACAAGATAGGCGAAGGTCAATTGCAAAGATGCTTTTACTCAAATGCATGTTGCCTATAATTGTGTTAATCATTTTGGTTGTTGCTTGCATAATACTTCTACAACATAAAAGGAAAAAGGATGAAAATCCACTTGAAAAGGATTTATCAACTTTAGGAGTTCCAAGAAGGATTTCTTATTATGAACTTGTACGAGCAACTAATGGATTCAATGAGAGCAATTTAGTTGGAAGGGGGAGCTTTGGTTCTGTGTATCAAGGGATTCTCTCTAGTGGGATGATGGTTGCAATTAAAGTATTTGATTTGAACTTGGAAGCAACATCAAGGAGCTTTGATGTAGAATGCAATGCAATGCGTAATCTACGACATCGAAATCTTGTTAAGATTATAAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGAATTCATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAGGCAACTATTTTCTAGACTTCTTGCAAAGGTTGAATATAATGATTGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAATTGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTAGATGAAAACATGGTTGCACATGTAAGTGATTTTGGCATTGCAAAGCTTTTGGATAAAGGACAGTCTAAATCTCATACTGAGACTTTGGCTACTCTTGGCTACGTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTGTCAAAGGAGATGTGTATAGCTATGGGATTATGCTAATGGAAATCTTCACAAGAAAGAAGCCAACAGATGATATGTTTATGGCAGAATTGAACTTGAAAAATTGGATTAATGAATCAATACCTAATTCAATCATGCAAGTTGTGGATTCCAATTTAATCCAACAACATGGGGAGCAAATTGATAACATATTGACTCCTATATTATCTATTTTGAGTTTAGCCTTAAATTGTTGCACAGATTCACCTGAAGCACGAATTAATATGACAGATGTCATCATATCATTAACCAAAATAAAGAGCTTGTTTATTGAGTGCCAAAAACTTAACTCATAA 1296 0.348 MASLSFLDLSQNLLTGVIPKSLESLSYLQYINFSYNRLQGEIPDGGPFINFTASSFMHNEALCGNPRLQVPPCDKQDRRRSIAKMLLLKCMLPIIVLIILVVACIILLQHKRKKDENPLEKDLSTLGVPRRISYYELVRATNGFNESNLVGRGSFGSVYQGILSSGMMVAIKVFDLNLEATSRSFDVECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSVEKWLYSGNYFLDFLQRLNIMIDVASALEYLHHGSSIPIVHCDLKPSNVLLDENMVAHVSDFGIAKLLDKGQSKSHTETLATLGYVAPEYGSKGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFMAELNLKNWINESIPNSIMQVVDSNLIQQHGEQIDNILTPILSILSLALNCCTDSPEARINMTDVIISLTKIKSLFIECQKLNS. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03753 431 Pfam Protein kinase domain 145 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03753 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Seca11g03753 431 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 220 428 - -
Seca11g03753 431 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Seca11g03753 431 Gene3D Phosphorylase Kinase; domain 1 127 219 - -
Seca11g03753 431 Gene3D Ribonuclease Inhibitor 1 81 IPR032675 -
Seca11g03753 431 PANTHER OS04G0122200 PROTEIN 5 420 - -
Seca11g03753 431 ProSiteProfiles Protein kinase domain profile. 144 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03753 431 SUPERFAMILY Protein kinase-like (PK-like) 121 416 IPR011009 -
Seca11g03753 431 Gene3D Transferase(Phosphotransferase) domain 1 220 428 - -
Seca11g03753 431 SUPERFAMILY L domain-like 2 66 - -
Seca11g03753 431 FunFam Serine-threonine protein kinase plant-type 125 219 - -
Seca11g03753 431 SMART serkin_6 144 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03753 Seca-Chr11 96520716 96525330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03753 7 428 Receptor kinase-like Gene Family AT3G47570 39.514 2.52e-98 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca11g03753 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03753 - K13420 mtr:25481440 643.269