Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03745 ATGCATCATGCTAGAATGCTTTTGCAACTTGAAATGGAAGAGGAACCTGTTTATGTCAATGCAAAGCAGTATCACGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATTAAAGTTAGAAAGGTAAGATTGATATCTAACTTATTTAGAAAGGTACCACTAGGAGGAAAGGATATACTATCCTGA 207 0.372 MHHARMLLQLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKVRLISNLFRKVPLGGKDILS. 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03745 68 ProSiteProfiles NF-YA/HAP2 family profile. 13 68 IPR001289 GO:0003700|GO:0006355
Seca11g03745 68 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 51 IPR001289 GO:0003700|GO:0006355
Seca11g03745 68 SMART cbf3 12 68 IPR001289 GO:0003700|GO:0006355
Seca11g03745 68 ProSitePatterns NF-YA/HAP2 subunit signature. 18 38 IPR018362 GO:0003677|GO:0016602
Seca11g03745 68 Gene3D - 13 56 - -
Seca11g03745 68 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 15 48 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03745 Seca-Chr11 95911829 95912035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03745 1 48 CCAAT-HAP2 Transcription Factor Family AT3G20910 72.917 3.07e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca11g03745 CBFB_NFYA 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03745 K08064 - cpap:110809289 81.2629