Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03738 ATGTCCCCGCTTCAAGAGCCCGACGACCACGACACCATCTCCGACCACCACCGCCATAAGAAGTGCTCCACCGCCGCAAACAAGAGAACCTCGCGGGAAACCGGCGGCTCAGGCGGCGGCACGATGAGGTACCGCGGGGTCAGACGCCGTCCCTGGGGACGTTACGCGGCCGAGATAAGGGACCCACAGTCAAAGGAACGCCGCTGGCTCGGCACCTTTGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCCGTGCCATGCGTGGAGCCAAAGCGCGAACCAATTTCGTCTACCCTGATTCCACTGAACAACACCTCTTCCACCCTTTCAACATTCCCAAACAATCCCAACAATTCAACAAGTTCATCCAGAATCGTCACTTGAATGCTTCACTTAACGGTGGTGATGACGTGTCTGCATTACCGACCCAGCATAATAATCCTTCACTCAACATGCTTCTATTTCGTGACTACCTTAACTCTTCCTCAAACCCCTTTTTAGTTCCTTCTTCTTCTTCTTCTCAACAGTTTCAGCACAATGGGAATAGCTCTTCTACCCCTTCATTATTACCAGCTTCCACGTGTCCCCAAGGTTGCTGTTGGGTGGATTCTTCTGCCAGCAACACTGATGACCATAATGGTTCCAGTGGAAAGGAAGGAGTCACTGAAACAATTGATGAAGGGTCTGAATTTTTCCCAATAGAACCTTCAGACTCTGGATTGTTGGAAGAGATAGTAAACAAGTTCATGACAAAATCAAAGTCAAAGTCAAAGACAGTGCCGAAAAATTGCGAGAAGACGCTCAAGACTGAGACCAATTTCTCCATTATTCCTGACTCAATTCCTCAACCAATTTCTGATCAGAGGGTTGTTTCTGCCACTCGGTGCTATGAAGATGCAAGGATGAGGCTTCCTATTATGGAGGGTTTTAATACTGTCACTTTTGATTACCCAAGTCACCCCATGCAACAATTTGAGACCACTCTTGATGGGTTTAACTTCAACAACACGCAGGCTATGACTTTTGGGGGTGAACAGTTTATGATGAATCATCCAGATTGCTCTATTATTATGGAAGATATTTTTCAGTATCCAGAACTTCTTAATTCTTTTGCAGCCAGGATGCAAAATGCCTAA 1146 0.4791 MSPLQEPDDHDTISDHHRHKKCSTAANKRTSRETGGSGGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDSTEQHLFHPFNIPKQSQQFNKFIQNRHLNASLNGGDDVSALPTQHNNPSLNMLLFRDYLNSSSNPFLVPSSSSSQQFQHNGNSSSTPSLLPASTCPQGCCWVDSSASNTDDHNGSSGKEGVTETIDEGSEFFPIEPSDSGLLEEIVNKFMTKSKSKSKTVPKNCEKTLKTETNFSIIPDSIPQPISDQRVVSATRCYEDARMRLPIMEGFNTVTFDYPSHPMQQFETTLDGFNFNNTQAMTFGGEQFMMNHPDCSIIMEDIFQYPELLNSFAARMQNA. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03738 381 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Seca11g03738 381 CDD AP2 43 99 IPR001471 GO:0003700|GO:0006355
Seca11g03738 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 223 - -
Seca11g03738 381 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Seca11g03738 381 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Seca11g03738 381 MobiDBLite consensus disorder prediction 170 192 - -
Seca11g03738 381 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Seca11g03738 381 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Seca11g03738 381 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Seca11g03738 381 MobiDBLite consensus disorder prediction 1 46 - -
Seca11g03738 381 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Seca11g03738 381 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03738 Seca-Chr11 95159372 95160517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03738 17 264 AP2-EREBP Transcription Factor Family AT1G24590 39.416 1.26e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g03738 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03738 - - aprc:113860142 330.487