Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03729 ATGCCAATGGATTTCGAGGAGCATGAGGAAGAGATGATGGGAATGGGTGAGGCGAGTTACGACGACTCGCTCGTTAACCCACCCCGAGTCAGAATGCCGAGTCCTGTCCAAGACCCCACCCCAGCGGTGGTGATGGTCAGGAACAGCGGCAAAGGGAGGTACAAAGAGTGCCTCAAGAACCACGCCGTCGGCATTGGAGGCCACGCCGTCGACGGTTGCCGTGAGTTCATTGCTGCCGGTGAGGAAGGCACCCTCGACGCTCTGAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGATAGCCCCATAACCGTTGCCGGAGGCCAGTACCATTCCTTCCACCGCCACCAGGCGCCGCAGTTCGCTGCGTGTTATCGTACCCCTTCGGGGTACCTCCATGTGGCGCCGCCGAGAGCGGCGGTGGCTGTGCCGCTGGCTCTGCCAGCGAACTCAGGGGGTGGTGGTGGGGCCCAGAGCGGTGGGGAGGATCATGAAGAGGTTTCGGACCCGAATGGTGGTGGTGGAGGGTCGAACTCGAAGAAGAGGTTCAGGACCAAGTTCAGTCCGGAGCAGAAGGAGAAGATGCTGGCTTTTGCTGAGAAAGTGGGTTGGAGACTTCAGAAGCATGATGATGGTTCTGTGCAGGAGTTCTGTGACCAGACTGGTGTCAAGCGTCAGGTTCTGAAGGTTTGGATGCATAACAACAAGCACACACTTGGAATGAAGCCCTAG 741 0.5884 MPMDFEEHEEEMMGMGEASYDDSLVNPPRVRMPSPVQDPTPAVVMVRNSGKGRYKECLKNHAVGIGGHAVDGCREFIAAGEEGTLDALKCAACNCHRNFHRKDSPITVAGGQYHSFHRHQAPQFAACYRTPSGYLHVAPPRAAVAVPLALPANSGGGGGAQSGGEDHEEVSDPNGGGGGSNSKKRFRTKFSPEQKEKMLAFAEKVGWRLQKHDDGSVQEFCDQTGVKRQVLKVWMHNNKHTLGMKP. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03729 246 Gene3D - 169 243 - -
Seca11g03729 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Seca11g03729 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 242 - -
Seca11g03729 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Seca11g03729 246 SUPERFAMILY Homeodomain-like 173 242 IPR009057 -
Seca11g03729 246 FunFam Zinc-finger homeodomain protein 2 174 244 - -
Seca11g03729 246 MobiDBLite consensus disorder prediction 154 187 - -
Seca11g03729 246 Pfam ZF-HD protein dimerisation region 53 103 IPR006456 -
Seca11g03729 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03729 Seca-Chr11 93792335 93793075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03729 3 242 ZF-HD Transcription Factor Family AT4G24660 48.583 1.10e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca11g03729 ZF-HD_dimer 6.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03729 - - lja:Lj0g3v0229739.1 294.278