Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03723 ATGAGTTCCAATTCTAAACAAAATAAGCTTCCTATAGAAGAAACAGAGGTTGATGAAGCTTACCTCTCTGCTCTGTTTCTAAGCTGTAGCAGGGTCTTTCCTGCAATTCTTAACGTTGCTGTTGATCTTAATTTGTTTGACATAATTGCTAAGGCACAAAGTTTAAGTTGTTCATCCTTGTCTGCCTCTGAAATTGCTTCTCAATTTCCAAAACAACACCTGGAATTGGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGACTAGTTATTCTCTTGTGACTTGCTCCATTCGCACCAATGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCCCTCCCGTTGGTCAATACTATGTATGTGACAAAGACGGAGAATCTTTGGGTCCATTCTCATCTTTAGTGCATCGACGATTTCGTCAAGTTTGGTAA 429 0.3963 MSSNSKQNKLPIEETEVDEAYLSALFLSCSRVFPAILNVAVDLNLFDIIAKAQSLSCSSLSASEIASQFPKQHLELAKRLERMLPVLTSYSLVTCSIRTNEDGKRERVYALPPVGQYYVCDKDGESLGPFSSLVHRRFRQVW. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03723 142 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Seca11g03723 142 SUPERFAMILY "Winged helix" DNA-binding domain 16 122 IPR036390 -
Seca11g03723 142 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 142 IPR016461 GO:0008168
Seca11g03723 142 FunFam Caffeic acid 3-O-methyltransferase 2 118 - -
Seca11g03723 142 Gene3D - 1 118 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03723 Seca-Chr11 93432861 93433289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03723 1 127 Monolignol Biosynthesis Gene Families AT5G54160 38.583 1.86e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03723 - - aprc:113869089 190.274