Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03720 ATGCAAGTGAAAATGAACTTGGTATCTGTTCTTTTGCTATTGGCTAGCGTATGTTGTTTTGCGCTGCCTGAGCTTGATTTACAAGAAGATGCACTCTTTGCATTGAAGTTATCATTGAATGCTTCACCCAGCCAGCTTACTAACTGGAACAAAAATCAAGTAAATCCTTGTACCTGGTCCAATGTTTACTGTGACCAGAATAGCAATGTTGTTCAAGTTTCACTAGCATTTATGGGATTCACAGGATACTTAACGCCAAGAATAGGAGCTCTAAAAAGCCTTACAACTCTTTCCTTGCAAGGGAACAGCATCACCGGTGACATACCTAAAGAAATAGGAAATCTTACAAGCTTGGTCAGACTCGATCTGGAGAACAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACACTGAGTCAAAACAATCTCAATGGGACAATCCCAGAATCACTTGCCAGTCTCCCGAGCTTGATCAATGTCCTGCTAGATTCGAATGATCTTAGTGGACAGATTCCAGAGCAGTTATTCAACGTTCCCAAGTACAAGTATGTATGTTTCTCTGGTAATAAGTTGAATTGTGGCGTGAATTATAATCATCTTTGCATATCTGATAATGCAGATCAAGGTTCATCACACAAACCAAAAGTAGGCATCATAGTTGGAATAGTTATAGGTTTAGCTGTCATCCTTTTTCTTGGTGGCCTGCTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTACATTTGGTCAAATAAAAAGGTTTGCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTCTATAAAGGCGTTCTAGTTGATGGCACAAAAGTTGCTGTCAAAAGGTTAACTGATTTTGAAAGTCCTGGGGGTGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTGGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCCATCGATTACGAGAACTCAAACCTGGGGAACCTGTTTTGGATTGGGCTACAAGAAAACGAGTGGCTCTCGGAACTGCCCGTGGCCTAGAATATCTTCACGAGCAATGTGATCCTAAGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTCGATGTTCGAAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGCGCAATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAAACTGGATGCTATTGTTGACAGCAACCTTAACAAAAATTACAACATAGAAGAGGTTGAAATGATTGTACAAGTTGCATTACTCTGCACACAAGGATCGCCAGAGGATCGTCCCGTAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCACTCGGAGGCAAGACTATGAGAGACTACAAAGGAGATTGGAGTTTGGAGAAGATTCAGTTTATAATCAAGATGCCATTGAGTTGTCCGGTGGAAGATGA 1836 0.4145 MQVKMNLVSVLLLLASVCCFALPELDLQEDALFALKLSLNASPSQLTNWNKNQVNPCTWSNVYCDQNSNVVQVSLAFMGFTGYLTPRIGALKSLTTLSLQGNSITGDIPKEIGNLTSLVRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLASLPSLINVLLDSNDLSGQIPEQLFNVPKYKYVCFSGNKLNCGVNYNHLCISDNADQGSSHKPKVGIIVGIVIGLAVILFLGGLLFFWCKGYKREVFVDVAGEVDRRITFGQIKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLVDGTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAHRLRELKPGEPVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLNKNYNIEEVEMIVQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQHVEVTRRQDYERLQRRLEFGEDSVYNQDAIELSGGR. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03720 611 ProSiteProfiles Protein kinase domain profile. 288 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03720 611 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Seca11g03720 611 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03720 611 SUPERFAMILY Protein kinase-like (PK-like) 267 563 IPR011009 -
Seca11g03720 611 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Seca11g03720 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Seca11g03720 611 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 212 - -
Seca11g03720 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Seca11g03720 611 SUPERFAMILY L domain-like 30 214 - -
Seca11g03720 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Seca11g03720 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 573 - -
Seca11g03720 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Seca11g03720 611 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Seca11g03720 611 Pfam Protein kinase domain 289 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03720 611 Gene3D Ribonuclease Inhibitor 25 224 IPR032675 -
Seca11g03720 611 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03720 Seca-Chr11 93270919 93278654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03720 4 611 Receptor kinase-like Gene Family AT5G10290 75.817 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g03720 Pkinase 4.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03720 - - gmx:100786654 1015.37