Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03693 ATGGAGTCAAATACTGAAATTCAGCCATTCATGACAATGCCTAGAATGGAAGATTTCTTAGAATTTGAAATAGAGACTCAAGATTTCTCTTCACTCAACCAGATATATAATCAAGGGTTTATCCCTATCCATTTCAACAACCAACAAGATCTGGAAACTACCAACTCGGGCTTTGAGTTGGATGACTCGGTCTCTAACACCAAAACTCATGTTGCTACTCCCGCGGAATTGGGAAATGTATCTTATGATGATAAGGCCAATGTTATGGTGGATTCTGATGCCTCAAAGAAAATTACACACATTGTTGGCAAAAGGACTTCTCTTTACAGAGGAGTTACAAGGCATCGATGGACACGTAGATATGAGGCACATTTGTGGGATAATAAGTGCAAAAAGGAGGGCCAGACCAAGATAGGGCGTCAAGGTGGGTATGACAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTAGCAGCTCTAAAGTATTGGGGACAATCTGCCACCACTAACTTTCCTGTATTAGTTTCCAATTATGCCAAGGAATTGGAGGAGATGCAAAATATAGGAAAGCAAGAATATATTGCCTCATTGCGAAGGAATAGCAGTGCCTTTTCAAGGGGATCTTCCATATATAGAGGTGTTTCAAGGCACCGTAGGGGAGGTAAATGGCAAGCAAAGATTCGCGGACTTGTAGGAAAGAAAGATCTATACTTGGGAACATTTGATAATGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTTAGAGGTGCAAACACTGTAACTAATTTTGAGATAAGTAGATATGATGTGGAAGCTATATCTAGTAGTACTCTTCTAGTTGGTGGGGCAGCAAAACAGATGAGGTTTTCTAAGGAATTGAAGAAGATATCTCCTATGACTAGTGGTCATCAAACTCGTAGTACAAATGTGAGTAATACCATCGATATCCCAATCATTCAGCCACTTGCTTCTATACCAAATGATCCCGTAACAACATTTTATAACCCAAACCCTTTCCACCTACTTCAACCTACCAACCAATTTCATCCTACCAATGATGGCAGTGGCATCACAGAGCCTTCTGAAATTACGACTAATGCAACCACACTGAATGAACTGGAAAAAGTTGTTGGGTTCTATATGTGGCCTCATCAGTCCTACTGA 1173 0.4084 MESNTEIQPFMTMPRMEDFLEFEIETQDFSSLNQIYNQGFIPIHFNNQQDLETTNSGFELDDSVSNTKTHVATPAELGNVSYDDKANVMVDSDASKKITHIVGKRTSLYRGVTRHRWTRRYEAHLWDNKCKKEGQTKIGRQGGYDKEEKAARAYDLAALKYWGQSATTNFPVLVSNYAKELEEMQNIGKQEYIASLRRNSSAFSRGSSIYRGVSRHRRGGKWQAKIRGLVGKKDLYLGTFDNEEEAAEAYDIAAIKFRGANTVTNFEISRYDVEAISSSTLLVGGAAKQMRFSKELKKISPMTSGHQTRSTNVSNTIDIPIIQPLASIPNDPVTTFYNPNPFHLLQPTNQFHPTNDGSGITEPSEITTNATTLNELEKVVGFYMWPHQSY. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03693 390 CDD AP2 208 269 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 PRINTS Ethylene responsive element binding protein signature 249 269 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 CDD AP2 107 173 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 ProSiteProfiles AP2/ERF domain profile. 209 267 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 Gene3D AP2/ERF domain 209 269 IPR036955 GO:0003700|GO:0006355
Seca11g03693 390 Gene3D AP2/ERF domain 108 173 IPR036955 GO:0003700|GO:0006355
Seca11g03693 390 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 305 - -
Seca11g03693 390 SUPERFAMILY DNA-binding domain 208 269 IPR016177 GO:0003677
Seca11g03693 390 Pfam AP2 domain 209 259 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 Pfam AP2 domain 108 163 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 SMART rav1_2 108 177 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 SMART rav1_2 209 273 IPR001471 GO:0003700|GO:0006355
Seca11g03693 390 SUPERFAMILY DNA-binding domain 107 172 IPR016177 GO:0003677
Seca11g03693 390 ProSiteProfiles AP2/ERF domain profile. 108 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03693 Seca-Chr11 92189679 92193397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03693 13 390 AP2-EREBP Transcription Factor Family AT5G65510 45.169 2.38e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca11g03693 AP2 1.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03693 K09285 - jre:108990656 367.466