Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03654 ATGATTGGTGTTGGAATCATACTATTCCGAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTTGGGAGTGTTTATAAAGCAGAATTACCTACAGGTCTAGTAGTGGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGCTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAAGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATTAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTAGCATGATAACCATAAGCAGTCTTACCGGGTTCCAGAAATAG 1035 0.4242 MIGVGIILFRRKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYKAELPTGLVVAVKRLNISDSDDIPTVNRQSFLNEIKTLTGARHRNIIKLYGFCSRRKQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVQGIVHAISYLHSDCSPPIVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMKVTDKCDVYSFGVVALEIMMGNHPGELLATLSSKDSQVLLKDVLDQRLPPPTGQLAEAIVFTVSVALACTRAAPESRPMMRSVAQELLATTQACLSEPFSMITISSLTGFQK. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03654 344 SUPERFAMILY Protein kinase-like (PK-like) 32 319 IPR011009 -
Seca11g03654 344 PANTHER LEUCINE RICH REPEAT KINASE 2 17 327 - -
Seca11g03654 344 ProSitePatterns Tyrosine protein kinases specific active-site signature. 178 190 IPR008266 GO:0004672|GO:0006468
Seca11g03654 344 FunFam Leucine-rich repeat receptor protein kinase MSP1 14 132 - -
Seca11g03654 344 Gene3D Phosphorylase Kinase; domain 1 12 132 - -
Seca11g03654 344 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Seca11g03654 344 ProSiteProfiles Protein kinase domain profile. 52 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03654 344 CDD STKc_IRAK 58 319 - -
Seca11g03654 344 Gene3D Transferase(Phosphotransferase) domain 1 133 330 - -
Seca11g03654 344 FunFam MDIS1-interacting receptor like kinase 2 133 325 - -
Seca11g03654 344 Pfam Protein kinase domain 54 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03654 Seca-Chr11 91470662 91471835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03654 6 226 Receptor kinase-like Gene Family AT4G08850 48.649 8.97e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca11g03654 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03654 - - gmx:100786462 563.918