Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03646 ATGGCTATGGGAAGGAGTTACATTGATAATAAAGATTTTGAAGAGGAGAAAGAATTCTACAGAAACGCTGTGAATTTGAACGAAAAGCAAGGAAAGAGAGGCCGTCTAGAGACCAAAGACAAAAGAAAAGATGACCAGATTAAAGATGATGACTATCTTTTGGGTGAAGCTAGGCAACCACTATGGCGCAAAGTGGCAGTACCTTCAAGCCTAATCAACCCATATCGCATAGTCATCATCCTCCGTCTCATAATCCTACTTTTCTTCTTCCAATTTCGTATCACAACACCAGTGCATGACGCATTTGCCTTGTGGCTAATCTCTGTGGTGTGTGAGTTCTGGTTAGCACTGTCTTGGTTTGTTGACCAGTTCCCCAAGTGGTTCCCCATCACTAGAGAAACTTACTTGGACCATTTGTCTATAAGGTTCGAGCGTGAAGGGGAACCAAGCCTTCTAGCCCCACTTGATGTCTTTGTCACCACTGCTGACCCTTTGAAGGAACCACCCATCATCACTGCAAACACTGTTCTATCAGTGTTATCTGTTGATTACCCTGTTGAGAAGGTCACCTGTTATGTCTCAGATGACAGTGCATCTATGCTTGTCTTTGATACACTGGCTGAGACTTCTGAGTTTGCAAGAATATGGGTTCCTTTTTGTAAAAAGTACAATATTGAGCCAAGGGCTCCCGAGTTTTATTTCTCTCAGAAAATTGATTACTTGAAAGATAAGGTGCACCCTACATTTGTAAAGGATCGCAGGGCCATGAAGGTGAGAGAGTATGAAGAATTTAAAGTGAAAATTAATGCATTGGTTGCAAAGGCTCAGAAAAAACCAGAAGAAGGGTGGGTGATGCAGGATGGTAATCCATGGCCTGGGAATGACTCTCATGATCATCCAGGAATGATTAAGGTCTATCTAGGAAGTTCTGGTGCACGGGACAAGGATGGGAAGGAACTACCAAGGCTTGTGTATGTTTCACGGGAAATACGTCCCTGCTATCAACACAACAAAAAAGCCGGTGCCATGAATGCTTTGCTTCGAGTTTCTGCTGTGCTTACCAATGCACCTTTCGTGTTGAATCTGGATTGTGATCATTACACCAATAATAGCAAAGCTATAAGGGAGGCTATGTGCTTTTTAATGGATCCCCAACTTGGGAAGAAGCTTTGTTATGTTCAATTTCCAAAAAGGTTTGATGGTGTTGATCACCATGACAGATATTCCAATCACAATACTATATTCTTTGATATCACCATGAAATGCCTTGATGGGATTCAAGGTCCGGTGTATGTTGGTACTGGATGTGTGTTCAATAGGCAGGCATTATATGGCTATGAGCCACCAGTCTCTAAGAAAAGGCCAAAGAAGAGTGGTTGTTGCTGGCCTTTGTGCTGTTGTTGTTCTTGTGGTGGTGACTCTCAACTCACATTTGATCTTGAAGAGATTGATGAAGAATGGCTTGATGGCTATGAGGAGCAAGAGGAATCATCCTTCATGTCCCAAAAAAAATTTGAGAAACGATTTGGACAGTCACCAGTTTTCATTGCTTCCACTTTGATGGAAGGTGGTGGACTTCCTAAAGGCATCAATTCACGATTACTAATTAAGGAAGCCATTCATGTTATAAGTTGTGGTTATGAAGACAAAACTGAATGGGGCAAACAGATTGGGTGGATTTATGGCTCAGTCACAGAAGATATCTTAACTGGGTTCAAGATGCATTGCAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGGTCTGTTCCAATAAATCTATCAGACCGATTGCACCAAGTTCTGAAATGGGCTCTTGGTTCGGTTGAGATTTTCCTTAGTGGCCATTGTCCATTATGGTATGGATATAGTGGAAAATTGAAGTGGCTGCAAAGACTGGCTTACATTAATATCATTGTTTACCCATTCACTTCCATCCCTCTACTTGTATACTGTGCAATTCCAACTGTTTGCCTTCTAACTGGAAAGTTCATCATCCCCATTGTCATTGGAGGTGTTTCAGCACATCTTTTTGCAGTATTTCAAGGTATCCTCGGAGTTATTGCAGGAGTAGACACTAATTTAAAGGTGAGAGCAAAAGCAGCAGAAGACACTGTATTTGGAGAGCTCTATCTCTTCAAGTGGACTACTCTACTTATCCCACCAACCAGTCTAGTAATCTTGAACATGGTGGGAATTGTGGCTGGCATCTCAAATGCCATTAACAATGGCTATGACTCATGGGGACCATTGTTTGGAAAACTATTTTTCTCCTTTTGGGTGATCATGCACTTATACCCTTTCCTAAAAGGAGTAGACACTAATTTAAAGGTGAGAGCAAAAGCAGCAAAAGAAACTGTATTTGGAGAACTCTATCTCTTCAAGTGGACTACTCTACTTATCCCACCAACCAGTCTAGTAATCTTGAACATGGTGGGAATTGTGGCTGGCATCTCAAATGCCATTAACAATGGCTATGACTCATGGGGACCATTGTTTGGAAAACTAATTTTCTCCTTTTGGGTGATCATGCTCTTATACCCTTTCCTAAAAGGTCTAATGGGAAGGAAAAACAGGACTCCTACAATAGTAGTCCTCTGGTCAATACTTCTAGCACTAATTTTCTCAATAATTTGGGTTCGCATTGATATCTTCTTGCCCAAGCAAACAGGTCTAGTACTCAAACAATGTGGATTAGAATGCTAA 2721 0.4149 MAMGRSYIDNKDFEEEKEFYRNAVNLNEKQGKRGRLETKDKRKDDQIKDDDYLLGEARQPLWRKVAVPSSLINPYRIVIILRLIILLFFFQFRITTPVHDAFALWLISVVCEFWLALSWFVDQFPKWFPITRETYLDHLSIRFEREGEPSLLAPLDVFVTTADPLKEPPIITANTVLSVLSVDYPVEKVTCYVSDDSASMLVFDTLAETSEFARIWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVHPTFVKDRRAMKVREYEEFKVKINALVAKAQKKPEEGWVMQDGNPWPGNDSHDHPGMIKVYLGSSGARDKDGKELPRLVYVSREIRPCYQHNKKAGAMNALLRVSAVLTNAPFVLNLDCDHYTNNSKAIREAMCFLMDPQLGKKLCYVQFPKRFDGVDHHDRYSNHNTIFFDITMKCLDGIQGPVYVGTGCVFNRQALYGYEPPVSKKRPKKSGCCWPLCCCCSCGGDSQLTFDLEEIDEEWLDGYEEQEESSFMSQKKFEKRFGQSPVFIASTLMEGGGLPKGINSRLLIKEAIHVISCGYEDKTEWGKQIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSVPINLSDRLHQVLKWALGSVEIFLSGHCPLWYGYSGKLKWLQRLAYINIIVYPFTSIPLLVYCAIPTVCLLTGKFIIPIVIGGVSAHLFAVFQGILGVIAGVDTNLKVRAKAAEDTVFGELYLFKWTTLLIPPTSLVILNMVGIVAGISNAINNGYDSWGPLFGKLFFSFWVIMHLYPFLKGVDTNLKVRAKAAKETVFGELYLFKWTTLLIPPTSLVILNMVGIVAGISNAINNGYDSWGPLFGKLIFSFWVIMLLYPFLKGLMGRKNRTPTIVVLWSILLALIFSIIWVRIDIFLPKQTGLVLKQCGLEC. 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03646 906 FunFam Cellulose synthase 273 447 - -
Seca11g03646 906 Coils Coil 10 30 - -
Seca11g03646 906 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 279 447 IPR029044 -
Seca11g03646 906 Pfam Cellulose synthase 774 897 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca11g03646 906 Pfam Cellulose synthase 155 672 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca11g03646 906 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 58 672 - -
Seca11g03646 906 SUPERFAMILY Nucleotide-diphospho-sugar transferases 169 669 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03646 Seca-Chr11 91401787 91406517 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03646 49 906 Cell Wall Biosynthesis AT5G17420 63.006 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03646 K10999 - gmx:100777278 1252.65