Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03645 ATGGAAGCAGAGGAGAAGAGGGCTATGATTGAAGCCAAGCGTGGTGAAGAGGTTCTCAAGTTAGAGGAAATGGCTGCAAAATATCGTGCTACCGGAACCACTCCAAAGAAGACTATGGGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTTGGGAGTGTTTATAAAGCAGAATTACCTACAGGTCTAGTAGTGGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGTTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAACAAGTCTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATTAGCTACTACACAGGCTTGTCTTTCTGAGCCCTTTAGCATGATAACCATAAGCAGTCTTACCGGGTTCCAGAAATAG 1143 0.4304 MEAEEKRAMIEAKRGEEVLKLEEMAAKYRATGTTPKKTMGKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYKAELPTGLVVAVKRLNISDSDDIPTVNRQSFLNEIKTLTGARHRNIIKLYGFCSRRKQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVQGIVHAISYLHSDCSPPIVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSNKSLSSIEDSQVLLKDVLDQRLPPPTGQLAEAIVFTVSVALACTRAAPESRPMMRSVAQELLATTQACLSEPFSMITISSLTGFQK. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03645 380 Pfam Remorin, C-terminal region 2 37 IPR005516 -
Seca11g03645 380 Gene3D Phosphorylase Kinase; domain 1 40 161 - -
Seca11g03645 380 PANTHER LEUCINE RICH REPEAT KINASE 2 48 363 - -
Seca11g03645 380 FunFam Leucine-rich repeat receptor protein kinase MSP1 44 161 - -
Seca11g03645 380 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
Seca11g03645 380 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
Seca11g03645 380 ProSitePatterns Tyrosine protein kinases specific active-site signature. 207 219 IPR008266 GO:0004672|GO:0006468
Seca11g03645 380 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Seca11g03645 380 ProSiteProfiles Protein kinase domain profile. 81 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03645 380 FunFam MDIS1-interacting receptor like kinase 2 162 361 - -
Seca11g03645 380 Pfam Protein kinase domain 83 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03645 380 CDD STKc_IRAK 87 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03645 Seca-Chr11 91398045 91401199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03645 36 255 Receptor kinase-like Gene Family AT4G08850 48.416 3.54e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca11g03645 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03645 - - gmx:100786462 572.392