Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03642 ATGGTGAAAAAAAAGAAGAACAAGATAGCCTTAATTCACATGGAAGCAGAGGAGAAGAGGGCTATGATTGAAGCCAAGCGTGGTGAAGAGGTTCTCAAGTTAGAGGAAATGGCTGCAAAATATCTTCTTCTTGGTGTTGTTATACCAGTTTGTGGCCTACTAATTGGGATGATTGGTGTTGGAATCATACTATTCCGAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTTGGGAGTGTTTATAAAGCAGAATTACCTACAGGTCTAGTAGTGGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGCTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAGAGATGTAACACTAAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCAAACAAGTCTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTTCTAGACCAACGCCTTCCACCTCCAACAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCGTGCAGTTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATTAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTAGCATGATAACCATAAGCAGTCTTACCGGGTTCCAGAAATAG 1224 0.4191 MVKKKKNKIALIHMEAEEKRAMIEAKRGEEVLKLEEMAAKYLLLGVVIPVCGLLIGMIGVGIILFRRKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYKAELPTGLVVAVKRLNISDSDDIPTVNRQSFLNEIKTLTGARHRNIIKLYGFCSRRKQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVQGIVHAISYLHSDCSPPIVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSNKSLSSIEDSQVLLKDVLDQRLPPPTGQLAEAIVFTVSVALACTRAVPESRPMMRSVAQELLATTQACLSEPFSMITISSLTGFQK. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03642 407 FunFam Leucine-rich repeat receptor protein kinase MSP1 70 188 - -
Seca11g03642 407 ProSiteProfiles Protein kinase domain profile. 108 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03642 407 FunFam MDIS1-interacting receptor like kinase 2 189 388 - -
Seca11g03642 407 ProSitePatterns Tyrosine protein kinases specific active-site signature. 234 246 IPR008266 GO:0004672|GO:0006468
Seca11g03642 407 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Seca11g03642 407 SUPERFAMILY Protein kinase-like (PK-like) 88 382 IPR011009 -
Seca11g03642 407 PANTHER LEUCINE RICH REPEAT KINASE 2 48 390 - -
Seca11g03642 407 CDD STKc_IRAK 114 382 - -
Seca11g03642 407 Gene3D Transferase(Phosphotransferase) domain 1 189 393 - -
Seca11g03642 407 Gene3D Phosphorylase Kinase; domain 1 68 188 - -
Seca11g03642 407 Pfam Remorin, C-terminal region 3 41 IPR005516 -
Seca11g03642 407 Pfam Protein kinase domain 110 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03642 Seca-Chr11 91381434 91384622 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03642 40 282 Receptor kinase-like Gene Family AT4G08850 46.341 4.91e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca11g03642 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03642 - - gmx:100786462 597.816