Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03628 ATGAGTCAAGGACTAATTATTTATCGCCATAATTATTTATCGCCATATTTTCAACACTTAGTATATTCCAATTTTCCTTCTTCTCCAAATCCAACAGTTCTTCTTGGTGTTGTTATACCAGTTTGTGGCCTACTAATTGGGATGATTGGTGTTGGAATCATACTATTCCGAAGAAAAGCCAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTTGGGAGTGTTTATAAAGCAGAATTACCTACAGGTCTAGTAGTGGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAACAGTGAACCGCCAGAGTTTTTTGAATGAGATAAAAACATTGACAGGAGCGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAAACAAATGTTTTTGGTTTATGAATATGTAAACAAAGGAAGTTTAGGAAAGGTGTTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGTACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTGTGCATAAAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGTTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGCTACACTGTCTTCACACAAGTCTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAACGCCTTCCACCTCCAATAGGCCAATTAGCTGAAGCAATAGTGTTCACAGTGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGGTGCGTTCTGTGGCACAAGAACTATTAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTAGCATGATAACCATAAGCAGTTTTACCGGGTTCCAGAAATAG 1197 0.411 MSQGLIIYRHNYLSPYFQHLVYSNFPSSPNPTVLLGVVIPVCGLLIGMIGVGIILFRRKAKHLDEESKSIENDIQSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYKAELPTGLVVAVKRLNISDSDDIPTVNRQSFLNEIKTLTGARHRNIIKLYGFCSRRKQMFLVYEYVNKGSLGKVLYGEEGKLELSWATRVKIVQGIVHAISYLHSDCSPPIVHKDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIMMGNHPGELLATLSSHKSLSSIEDSQVLLKDVLDQRLPPPIGQLAEAIVFTVSVALACTRAAPESRPMVRSVAQELLATTQACLSEPFSMITISSFTGFQK. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03628 398 CDD STKc_IRAK 105 373 - -
Seca11g03628 398 PANTHER LEUCINE RICH REPEAT KINASE 2 36 381 - -
Seca11g03628 398 FunFam Leucine-rich repeat receptor protein kinase MSP1 61 179 - -
Seca11g03628 398 FunFam MDIS1-interacting receptor like kinase 2 180 379 - -
Seca11g03628 398 ProSiteProfiles Protein kinase domain profile. 99 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03628 398 Pfam Protein kinase domain 101 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03628 398 Gene3D Transferase(Phosphotransferase) domain 1 180 384 - -
Seca11g03628 398 ProSitePatterns Tyrosine protein kinases specific active-site signature. 225 237 IPR008266 GO:0004672|GO:0006468
Seca11g03628 398 SUPERFAMILY Protein kinase-like (PK-like) 79 373 IPR011009 -
Seca11g03628 398 Gene3D Phosphorylase Kinase; domain 1 59 179 - -
Seca11g03628 398 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03628 Seca-Chr11 91297981 91299425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03628 32 273 Receptor kinase-like Gene Family AT4G08850 45.306 8.69e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca11g03628 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03628 - - gmx:100786462 594.734