Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03607 ATGCACCTCGTCGGAGAGATTCTCCTTGACGGGTGCATTTTGTTGATGAAGTCTCTCTCACTTCGTTCCCGTGCCTTCCCAAGGGATATTCTTCCAAATGGAGATAAAGAGGCTCATGCTCAAGCTATTGCTAATTTTGGATCTCAAGAGGATCCTGAGAAACTCAAGCTTATAGAAGCAGCTATAAAAGTTCAGGCTGCTTCTAGAGGCTATCTGGCTCGTCGGGAATTTCAAACACTCAAAGGTGTCATACAACTGCAAGCTATTATTCGTGGCCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAAGGAATTGTTAAATTTCAAGCATTGGCTCGTGGTTACAGTGTTAGGCGTTCTGCTATTGGGCGCGAAGTCCTGAAAATTCGCAAGGTAAAAGTTCTTTGA 420 0.4357 MHLVGEILLDGCILLMKSLSLRSRAFPRDILPNGDKEAHAQAIANFGSQEDPEKLKLIEAAIKVQAASRGYLARREFQTLKGVIQLQAIIRGHLVRRQAVSALYCVKGIVKFQALARGYSVRRSAIGREVLKIRKVKVL. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03607 139 SMART iq_5 56 78 IPR000048 GO:0005515
Seca11g03607 139 SMART iq_5 79 100 IPR000048 GO:0005515
Seca11g03607 139 SMART iq_5 104 126 IPR000048 GO:0005515
Seca11g03607 139 PANTHER IQ-DOMAIN 5-RELATED 38 123 - -
Seca11g03607 139 ProSiteProfiles IQ motif profile. 57 85 IPR000048 GO:0005515
Seca11g03607 139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 124 IPR027417 -
Seca11g03607 139 ProSiteProfiles IQ motif profile. 81 108 IPR000048 GO:0005515
Seca11g03607 139 Pfam IQ calmodulin-binding motif 107 124 IPR000048 GO:0005515
Seca11g03607 139 Pfam IQ calmodulin-binding motif 59 78 IPR000048 GO:0005515
Seca11g03607 139 Pfam IQ calmodulin-binding motif 81 98 IPR000048 GO:0005515
Seca11g03607 139 ProSiteProfiles IQ motif profile. 107 132 IPR000048 GO:0005515
Seca11g03607 139 Gene3D - 54 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03607 Seca-Chr11 90823736 90824926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03607 48 130 IQD Protein Family AT1G18840 63.855 3.58e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03607 - - tpra:123907401 160.614