Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03605 ATGTTGTCCAGCAATGAAGAAAAATATGTGTCTCTCAACAATCTATCCACCAACCCAGATAATCTGAACATAAAAGTGAGGATTTCACGTATATGGGACACACTCAACATACATCGAAAGAAAGAATTAATTAGCACAGACATGGTGCTAATTGATGAAAAGAGCAATTACATACATGCTTCTATAGGGAGAAATATTGCTCATAAGTTCAAGCCTCTTCTAAAGGAAGGAAAAATTTACACCATTAAAAATTTTGAGGTGACAAACAATAAAGAAAAATTCCCAGTGGTCCAAAAGAACCCTTCAATGTTACATTTTTGTGCCACAACAATTGTGAAAGATGCAGGTTGTGATGAAAGCATCATTCCTCACCATGTTTTTGAATTTGTTAATCTTGATGATTTACAAAGTCGGTGTGGAAAGGATGTGTTGACAGATGTGATTGGAGTTATCACAAAAGTTGGTCCAATTGAAGAGAAGAGGACTATTGGGGGCAGCGTTGATACCTTGACACTTCACTTACAAGACATAAGGGGAAATAGGGTTAAAGTGACAATATGGGATGAATATGTAAAGCTATTTGAGCAGAAATTGAAAGAAAATGTGTCTAAAGATCCTCAAGTCACTGTTGCAATTTTCACATCAACTATAATTAAAGAATTTCGAGGTGAATTGTCTATTTCCACATCAAGATCAACAAATATTTATGTCAACATAGACATACCAGAATCTAATGAGCTCATACAATCATTCAAGGATTCAAGTGATGAACCTATAGTTGGTAACTTTGAGGTGTCAAAGGATGGTGTCTGTCCTAAAACAGTGAAGACTATAGCTGAACTTCTGTCCATGGCAAGTTTAAAGAGTAATACGAATGATGTGTATTGTTGTGCTGCTACTGTAAACGATATCTTGCTGAAAAATGGTTGGAATTATGTTTGTTGCCCTCATTGCAAAAAAAAGGCTGATAGGACAACTACAAATTTCAGTTGTCAACATTGCCACAAAGTTGTTGAGTATCCAATGACAAGGTTGCGTTTGGAGCTTGATGTCAAAGATTCAACAGATTCTACCATATTTGTTCTATTTCATGAAGTTGCTGAACAATTAACACAATTGAACTTAGGAGACCATGCCACAACCTTTGAAAATGAAAATGGTGATGATTTGAACCTGCCACCCCAACTCCTAAAAATCATAGGTACTACCCATGTCTTCCAAATAAAAATGAGCACCTATTTTGAAAGCTATGGAAGGCGCAGTTTCACATCAAATAAAATTCTCAAGCCAGTTGTTAAGATTGAGGACGAAGATACGAAAGAAACCTCAGGTGCCAAATCAAAGGAAAATACATTGGAAAAGATTGTTTCTTCCTTAAATGGATCTTCAGATGCAAAAAAAATAAATTCACCACAAAAGAGGAGAAAGTTAAGATTCCTCAATGATTACTTCATAATATATTCAAATTTAACGGTAAATGCAATCAAAAATAGGAATTTCCTTCAAGAAGACCAACCTGTGTTTTTTTTTTTACCAGAGAATGGAAGACAAAAGGTGCATTTCTTCATAACAGCAATTCTTCATAACAGTTTTCATTCTAAAGACATGAATCAAAATTCAGAAAGCACAATGTTATGTAATCAACAAGTCACAGGAGAAAGAAACATAAAAAGAAAGAAAAATGAAAGAAATAAAGCACCTTTGCATTTACTGGAACACATAAATGGTGACGGACCAACTTATATGGATCTTGGACCTCCAAATTTTGCATGTGAAGAATGTGGAAGCACCATGTGGTATGAAGAAAGAACAGATAAACCACATCGACCAAAAAAACCAAAATTTTCTATATGCTGCCAACGAGGAAAAGTAAAACTGCCTATTCTTGAAGAACCACCAGAAGCTTTGAAAGCACTTTTAAGTTTTGAAGGCGGTCGACACTCTATGAAGTTTAGGGAAAAAATAAGAGCGTATAATTCTATTTTTGCTTTCACATCCATGGGTGCTAAAATAGACAACACAGTCAACTTACGGCCTGGTCCTTATGTGTTCAAAATTAGTGGTCAAAATTATCACAGAATTGGAGGACTCATACCTGAAGAAGGAAATCAGCCAAAGTTCTCCCAGCTTTATGTCCATGATACTGAAAATGAAGTCCAAAATAGACTACGTTCCTTAAATCATGGCAAAATTGCTGAGGATCTTGATCCAACTATTGTTCAAAGCTTAAAAGAAATGCTTGATATGTATAATCCCATTGCCCAAGTATTCAGAATGGCAAGAGACAGATTATCTACATCTCAAACAAACAATGTACATATCAAGTTACTTGGAACAAGATCAATAGAATCGCGGCAATATAACAAACCCTCCTCAACAGAAATTGCAGCTCTAATTGTTGGAGATTTGGGACAATCAATTGGAACAAGAGATATAGTAATAGAGCATAAAACAGATGGCCTCCAAAGAATATCAGAGTTACAACCTTCATTTATGGCTATGCAATATCCATTATTATTTCCATATGGTGAAGATGGGTTTCACTTAGACATTTCTTATTGTCAAAATGATGGGGGGAATAAAACAAAGCGAGAAAATGTGACAATGAGAGAATATTACGCATACCGCATACAACAAAGAGGCTTAGAGGCAAAGACTCTTATTTCCGCCGGTCGATTATTCCAACAATATATTGTTGATGCATACACGGCTATAGAAGAAGATCGATTGAGATGGATTAAACAAAATCAAACAGTGCTACGCACGGAGTTGTACAAGAATGTATGTGATGCAGTAGTTCGTGGAGATACTATTGCTGCTGCTACTGGTAAGAGAATTGTTTTACCTTCTTCTTTTACAGGTGGTCCTCGATATATGGTCCAAAACTATCAAGATGCTATGGCTATATGTAGAACCTTTGGAAATCCAGATATTTTCATGACATTTACTGCCAATCCAAAGTGGCCTGAGATTCAGTATATATTTCATCAAGTTCCACGACAATCAGCTGATGATAGACCAGACATTAAGACTAGAGTCTTCAAGATGAAAGTTGATCAACTAATGAAGCACATAGTTGAAGGACAATATTTTGGTCAAACTATATCAGTCATATACACAATCGAGTTCCAAAAAAGAGGCCTACCTCACGCTCACATTTTGTTATGGCTGCACCAAAGTAATAAATATCCAACCCCACAGGATATTGATAGAATAATTACAGCAGAATTACCATCTCAAGAAGATGATCCAATGGGTTTTAATGCTGTCACACAATTCATGTTGCATGGACCATGTGGAAGTGGAAACAAAAATGCACCTTGCATGGTTGATGGTTTTTGCAGCCGAAATTACCCCAAAAAATTCAGTAATGAAACAACCATAGACAAGGATGGCTTTCCTACTTATAGAAGGAGGGATGATGGAAGACATGTGAAAAAGGGAGATATCAACTTAGACAACCAATTTGTTGTTCCATATAATAGGGATTTATTGCTAAAATTCCAGGCACACCTAAATGTTGAATGGTGCAATAAGTCCAGAGCTATCAAGTACCTCTTTAAGTATCTACACAAAGGGCCTGATAGAGCAACAATCCTAATAGAAGAAAATGTTTCTGTGTCAAACACATCAAACTCAACTGAGATAAGAGAAGTTGATGAGATCAAAACATATTTGGATTGCAGGTATGTCTCCGCATGTGAAGCATGTTGGAGAATATTTAATTTTGATATACATTATAGAAGTCCATCGGTAATAAGATTGACATTCCATTTACCCGGAGAAAACTCACTCATTCTAAGAGACTCCCAACCTTTGTCATCAGTCATAAGAAGAGATGGGATTGAACATACCATGTTTACAGAATGGATGAGGATGAATTCAATTAGTCCTGAAGCACGTACATTAACATATTCTGAATTCCCAACCAAATTTGTTTGGGATCAAAGAAAAAAAATATGGAAACAAAGGCAAATTGGGAGAACAATTGGAAGAATTTATTATGCACACCCAACATCTGGTGAAAGATATTACTTGAGAATTTTGTTAAATATTGTTCGAGGACCACAAAACTATGAACAAATTAGGACAGTGGGTGGTTTAATTTATACAACTTTCAAAGAAGCATGTTACGCTTTAGGGCTATTGAATGACGACAAAGAGTGGAATGTTGCATTGAATGAAGCAGCCCATTGGGCCTCAGGTTCTCAGTTGAGGGAGTTATTTGTCACTATTCTTCTTTTCGGTGAAGTAACAAATGTGGAACAATTTTGGAAAAACAGTTGGCAACTATTGTCTGATGATATTCTCTACAACAAAAGACGCTTATTTCATCATTTTGGTTTAGAGCTCACTGTTGAACAAATCAAAACATATTGCTTGATTGAAATTGAAAAGCTTTTAATCAAGAATGGGAAAGAGCTATCTGATTTCAATGGAATGCCTTTGCCAGATAAGTCAGCAGTGGAACCTATGGATAATAGACTAATTAGGGAGGAGCTGAATTATAATATTCAAGAATTGGAAAATGAACATACAAGATGTTATCCATTACTAAATCAGGAACAAAGTGAAATATATAATGTTGTTATGCATGCTGTCAACACTAACACAGGTGGACTATACTTTGTCTATGGGCACGGAGGCACTGGGAAGACTTTTTTGTATAGGACAATCATTGCAAAACTCAGAACAGCCCATAGTAGATTTCAAATACCATTAGATATTTTTGAAAACAGCACTTGCTCAATCAAGCAAAATACTCAACTTGCTCAGTTAATGATTCAAACAGATCTCATTATTTGGGATGAGGCACCAATGACAAACAAATTAGCATTTGAAGCACTACATAGATCACTACAAGACATTGTTGGTTACAAGTATCCAGACAAAGCCACAGATCCATTTGGAGGAAAAACAATCCTTCTTGGCGGAGATTTTAGCATGAGAGTTAGTGATAATACTTCTTCGGGTGAACTAAACTCTTTAGCACGTGAGTTTAATACATGGCTTCTTCAAATTGGTGATGGAAAAATACCAACCATTAGTAGAGAAGGAGAAGAGGTTCCGTCATGGACAAGAATACCAAGTCAATACCTATTAACCCCAATGGGTGATTCACTCAAACAAATTGTGGAAATCACATATCCAAATTTACAACAACATCTATGGAATGAAGAATACCTCAGAGAAAGAGCAATACTCACTCCTTTAAATGACACTGGTGATGAAATCAACAATTATATTATTGACATGATTGAAGGATCGATAAAACAATATAGAAGCTCAGACGAGATTGACAAGGCAACTGACAACATTATCGAACAAGAGCTTATGTATCCGGTAGAATTTTTAAATTCCTTAAATTTTACTGGAATTCCAAATCATTGCTTGAACCTCAAAGAAGGAATGCCAATCATGTTATTAAGGAATATAAATCCAGCATTGGGAATGTGCAATGGAACAAGACTCCTTATCATGCATCTAGGAAATTGGATAATAGAAGCAAAAATAATTACAGGAACCAACATTGGTGCAAAGGTACTTATCCCACGGATAGTTTTAACAGCATCTGACTCAAAGTGGCCATTTGTCTTGCGAAGAAAACAATTCCCAATAAAGGTATGCTATGCAATGACAATAAACAAGAGTCAAGGACAATCATTGAACTACATGGGATTATATTTGCCAAAACCTGTATTTTGTCATGGACAATTATATGTTGCATTGTCAAGAGTAACTTCACCGTTAGGTTTGCGAATCCTTATTTTTGAGCAAGATGATAGATATATTGAGTACACTAAAAATGTTGTGTACCATGAAGTTTTTAATGGACTGCTTTGA 5844 0.3576 MLSSNEEKYVSLNNLSTNPDNLNIKVRISRIWDTLNIHRKKELISTDMVLIDEKSNYIHASIGRNIAHKFKPLLKEGKIYTIKNFEVTNNKEKFPVVQKNPSMLHFCATTIVKDAGCDESIIPHHVFEFVNLDDLQSRCGKDVLTDVIGVITKVGPIEEKRTIGGSVDTLTLHLQDIRGNRVKVTIWDEYVKLFEQKLKENVSKDPQVTVAIFTSTIIKEFRGELSISTSRSTNIYVNIDIPESNELIQSFKDSSDEPIVGNFEVSKDGVCPKTVKTIAELLSMASLKSNTNDVYCCAATVNDILLKNGWNYVCCPHCKKKADRTTTNFSCQHCHKVVEYPMTRLRLELDVKDSTDSTIFVLFHEVAEQLTQLNLGDHATTFENENGDDLNLPPQLLKIIGTTHVFQIKMSTYFESYGRRSFTSNKILKPVVKIEDEDTKETSGAKSKENTLEKIVSSLNGSSDAKKINSPQKRRKLRFLNDYFIIYSNLTVNAIKNRNFLQEDQPVFFFLPENGRQKVHFFITAILHNSFHSKDMNQNSESTMLCNQQVTGERNIKRKKNERNKAPLHLLEHINGDGPTYMDLGPPNFACEECGSTMWYEERTDKPHRPKKPKFSICCQRGKVKLPILEEPPEALKALLSFEGGRHSMKFREKIRAYNSIFAFTSMGAKIDNTVNLRPGPYVFKISGQNYHRIGGLIPEEGNQPKFSQLYVHDTENEVQNRLRSLNHGKIAEDLDPTIVQSLKEMLDMYNPIAQVFRMARDRLSTSQTNNVHIKLLGTRSIESRQYNKPSSTEIAALIVGDLGQSIGTRDIVIEHKTDGLQRISELQPSFMAMQYPLLFPYGEDGFHLDISYCQNDGGNKTKRENVTMREYYAYRIQQRGLEAKTLISAGRLFQQYIVDAYTAIEEDRLRWIKQNQTVLRTELYKNVCDAVVRGDTIAAATGKRIVLPSSFTGGPRYMVQNYQDAMAICRTFGNPDIFMTFTANPKWPEIQYIFHQVPRQSADDRPDIKTRVFKMKVDQLMKHIVEGQYFGQTISVIYTIEFQKRGLPHAHILLWLHQSNKYPTPQDIDRIITAELPSQEDDPMGFNAVTQFMLHGPCGSGNKNAPCMVDGFCSRNYPKKFSNETTIDKDGFPTYRRRDDGRHVKKGDINLDNQFVVPYNRDLLLKFQAHLNVEWCNKSRAIKYLFKYLHKGPDRATILIEENVSVSNTSNSTEIREVDEIKTYLDCRYVSACEACWRIFNFDIHYRSPSVIRLTFHLPGENSLILRDSQPLSSVIRRDGIEHTMFTEWMRMNSISPEARTLTYSEFPTKFVWDQRKKIWKQRQIGRTIGRIYYAHPTSGERYYLRILLNIVRGPQNYEQIRTVGGLIYTTFKEACYALGLLNDDKEWNVALNEAAHWASGSQLRELFVTILLFGEVTNVEQFWKNSWQLLSDDILYNKRRLFHHFGLELTVEQIKTYCLIEIEKLLIKNGKELSDFNGMPLPDKSAVEPMDNRLIREELNYNIQELENEHTRCYPLLNQEQSEIYNVVMHAVNTNTGGLYFVYGHGGTGKTFLYRTIIAKLRTAHSRFQIPLDIFENSTCSIKQNTQLAQLMIQTDLIIWDEAPMTNKLAFEALHRSLQDIVGYKYPDKATDPFGGKTILLGGDFSMRVSDNTSSGELNSLAREFNTWLLQIGDGKIPTISREGEEVPSWTRIPSQYLLTPMGDSLKQIVEITYPNLQQHLWNEEYLRERAILTPLNDTGDEINNYIIDMIEGSIKQYRSSDEIDKATDNIIEQELMYPVEFLNSLNFTGIPNHCLNLKEGMPIMLLRNINPALGMCNGTRLLIMHLGNWIIEAKIITGTNIGAKVLIPRIVLTASDSKWPFVLRRKQFPIKVCYAMTINKSQGQSLNYMGLYLPKPVFCHGQLYVALSRVTSPLGLRILIFEQDDRYIEYTKNVVYHEVFNGLL. 1948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03605 1947 Pfam Replication protein A OB domain 139 238 IPR031657 -
Seca11g03605 1947 Pfam PIF1-like helicase 1649 1829 IPR010285 GO:0000723|GO:0003678|GO:0006281
Seca11g03605 1947 Pfam PIF1-like helicase 1564 1648 IPR010285 GO:0000723|GO:0003678|GO:0006281
Seca11g03605 1947 Pfam Replication factor-A C terminal domain 297 418 IPR013955 -
Seca11g03605 1947 Gene3D - 1516 1563 IPR027417 -
Seca11g03605 1947 Gene3D - 1564 1654 IPR027417 -
Seca11g03605 1947 CDD RPA1_DBD_A_like 24 112 - -
Seca11g03605 1947 CDD RPA1_DBD_B_like 146 252 - -
Seca11g03605 1947 SUPERFAMILY Nucleic acid-binding proteins 275 412 IPR012340 -
Seca11g03605 1947 Gene3D - 7 114 IPR012340 -
Seca11g03605 1947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1473 1647 IPR027417 -
Seca11g03605 1947 SUPERFAMILY Nucleic acid-binding proteins 127 252 IPR012340 -
Seca11g03605 1947 SUPERFAMILY Nucleic acid-binding proteins 8 115 IPR012340 -
Seca11g03605 1947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1728 1943 IPR027417 -
Seca11g03605 1947 CDD SF1_C_RecD 1877 1919 - -
Seca11g03605 1947 Pfam Helitron helicase-like domain at N-terminus 872 1055 IPR025476 -
Seca11g03605 1947 CDD RPA1_DBD_C 278 438 IPR047192 -
Seca11g03605 1947 Gene3D - 122 258 IPR012340 -
Seca11g03605 1947 Gene3D - 264 441 IPR012340 -
Seca11g03605 1947 PANTHER UNCHARACTERIZED 918 1925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03605 Seca-Chr11 90798927 90808879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03605 8 474 Core DNA Replication Machinery Family AT4G19130 23.400 7.61e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03605 - - tpra:123895819 2075.06