Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03598 ATGACGCCACCAAATCACATCCTAGCGAAAACGAAAGACCAAGAAAACCAAGGAGGTGGTAATTCCGATACCCAGAAAACAACAAAAGCAGCAGAGCAAGGCCTAAAGTGCCCAAGATGCGACTCTGCTAACACCAAATTCTGTTACTACAACAACTACAGTCTCAGCCAGCCACGGCATTTCTGCAAGACTTGCAGAAGGTACTGGACAAACGGTGGAGCGTTGAGGAACGTTCCAATTGGTGGTGGTTGCAGGAAGAACAAGAAGGTGAAAACGACGTCGTCTTCATCCTCATCATTATCAAGGCTCTCCTATGATTCCAAAGACTCTGCTTCCTCTTCTTCAGAGCTTGCTGGCCTCAGATTCTTCCACATGAACAACTCACCTTCACTGGATTTTCACCTTGGTGGTTCTGGTTCTGGTTCTGGTTCTGGATTACCCTTCCCTTCAAGGCTTCAATATCATCATTTTCACCCTGCTACCTATAACCAGTTCTCCTCTTTTGGGGCTGTTTCTGCAGCAAATGCTTCAAGTTTCCAACTTGATAACTCTGTTGCATCAGATTCTTTAATGGGTCTAAACTATCCATTTCCAGCTGGAACCGCAATCCAAGGCGTGAACTCGTTGAATGTTAACAGTAGCCTTGCTAGTTCAATTGAGTCATTGAGCTCTATCAACCAGGACTTGCACTGGAAGCTTCAGCAGCAGCGATTGGCAATGGTGTTCGGTGGAGATACCCAGAAAGACAACATTCATGGTAGTGGAAGCGTTTCAGTTCCTCAGGTTGTTAACCTTGAGAATCCCAAGACAGCAGAGATTTTTCAAGCCAGAAAAGAAGATCAACCAACTGAATGGTTCTTTGCTCCTACGACAACCAGTAATGGCCATGATAATGCACCAATTGCAAACAACAACAACAACTGGAGTAATGGTGTTAATGTTTGGGGTGATGTGCAGCAACAATATAGCACTATGCCCTAG 981 0.4506 MTPPNHILAKTKDQENQGGGNSDTQKTTKAAEQGLKCPRCDSANTKFCYYNNYSLSQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKTTSSSSSSLSRLSYDSKDSASSSSELAGLRFFHMNNSPSLDFHLGGSGSGSGSGLPFPSRLQYHHFHPATYNQFSSFGAVSAANASSFQLDNSVASDSLMGLNYPFPAGTAIQGVNSLNVNSSLASSIESLSSINQDLHWKLQQQRLAMVFGGDTQKDNIHGSGSVSVPQVVNLENPKTAEIFQARKEDQPTEWFFAPTTTSNGHDNAPIANNNNNWSNGVNVWGDVQQQYSTMP. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03598 326 MobiDBLite consensus disorder prediction 7 27 - -
Seca11g03598 326 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Seca11g03598 326 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Seca11g03598 326 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Seca11g03598 326 MobiDBLite consensus disorder prediction 1 27 - -
Seca11g03598 326 MobiDBLite consensus disorder prediction 88 110 - -
Seca11g03598 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 239 IPR045174 GO:0003700|GO:0006355
Seca11g03598 326 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03598 Seca-Chr11 90200321 90201301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03598 20 326 C2C2-Dof Transcription Factor Family AT5G65590 38.650 1.05e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g03598 zf-Dof 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03598 - - gmx:100780729 295.819