Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03557 ATGAGTGATTCGGCAGATTTGGACTCCTATATATCCACTCATGCGATATCATCATCTACATCCAGAAAGTCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTACTCAGCAACAGTTGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGCCGGATCTAAATAG 381 0.4226 MSDSADLDSYISTHAISSSTSRKSYALEEACTVWEGVLIDQKEESTSTDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNYSATVGQVGNVGVNQKSLGKAGSK. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03557 126 Gene3D - 14 112 IPR014722 -
Seca11g03557 126 SUPERFAMILY Translation proteins SH3-like domain 49 125 IPR008991 -
Seca11g03557 126 SMART Ribosomal_L2_C_2 49 126 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca11g03557 126 Pfam Ribosomal Proteins L2, C-terminal domain 49 126 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca11g03557 126 FunFam 50S ribosomal protein L2, chloroplastic 36 111 - -
Seca11g03557 126 PANTHER RIBOSOMAL PROTEIN L2 47 126 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03557 Seca-Chr11 89064919 89065341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03557 50 125 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.026 6.44e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03557 K02886 - lsv:128133499 196.823