LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03543	ATGGGTAAGGACACTATCGCTGACATAATAACCTCTATACGCAATGCCGACATGAATAGAAAAAGAACAGTTCAAATACCTTTTACTAACATCACCGAAAACACTGTGAAAATACTTTTACGAGAGGGTTTTGTTGAAAACGTCAGAAAACATCGAGAAAACAACAAATATTTTTTAGTATTAACTCTACCGTATAGAAGAAATAGGAAAGGATCATATAAAACTTTTTTAAATTTAAAACGGATCAGTACACCTGGTCTACGAATCTATTCGAATTATCAACGAATTCCTAGAATTTTAGGAGGGATGGGGGTTGTAATTCTTTCTACTTCTAGAGGTATAATGACAGATCGAGAAGCTCGATTAGAAAGAATCGGCGGCGAAGTTTTATGTTATAATGAAAAAAAAGAGTTTTTTCTTTAA	423	0.331	MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFVENVRKHRENNKYFLVLTLPYRRNRKGSYKTFLNLKRISTPGLRIYSNYQRIPRILGGMGVVILSTSRGIMTDREARLERIGGEVLCYNEKKEFFL.	141

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g03543	140	FunFam	30S ribosomal protein S8	77	133	-	-
	Seca11g03543	140	ProSitePatterns	Ribosomal protein S8 signature.	104	121	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g03543	140	Gene3D	-	1	76	-	-
	Seca11g03543	140	Hamap	30S ribosomal protein S8 [rpsH].	1	134	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g03543	140	PANTHER	40S RIBOSOMAL PROTEIN S15A	4	132	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g03543	140	FunFam	30S ribosomal protein S8, chloroplastic	1	73	-	-
	Seca11g03543	140	SUPERFAMILY	Ribosomal protein S8	1	132	IPR035987	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g03543	140	Gene3D	-	77	132	-	-
	Seca11g03543	140	Pfam	Ribosomal protein S8	4	132	IPR000630	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03543	Seca-Chr11	89008431	89008853	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03543	8	132	Cytoplasmic Ribosomal Protein Gene Family	AT2G39590	29.008	6.55e-07	43.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03543	K02994		-	gmx:3989332	245.358