Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03537 ATGGGTTTCGTGAAGAAGGCTTCCACATCTAAGCCAAAGATTTCGAAAAAAATACCTTCTCTTTTCACCTCAGAACATGCGAATGAATTGGGTAATGAGGCTACTTTAATAGACCCAGTAAAAAATGAAATTCATTGTGTTGTTCGTAAGTATGGTGAAAACGTGTATTTCAGTCATGGATGGAAACGAATTAAGGATATTTATGACCTTGGTGAGGGTGGTTGGTTAAAGTTTACTTATCTCGAGGATACTGATTTCAAAATGAGGGTCTTTGATAGGGATTTGGTTGAAGTTCAATATCCTCGTCCTGCTACTGATTACCTACTTTCTGCGCACATTGATCCCGATTTTATACCCTTCCCTGATTATGTTCCACCAAACTTTGATGACATCTTATATTATGACAAGCAGTTGACCGAGTACACAGCTTCTAAGTATTCATTAAATCTTCCAACAGATCTATGTTTGAGGTTTGCTGGTAAACCTGTCAACTGTGTTCTTAGAGATCATGATGGTTATGATTTTCCAGTTAATTTATCGTGGTCTAAAAACAAGAAGATTGCTTACATAACCAAAGGATGGAAAGATTTTTGCACTTCAAAGGGGTTAAAGATTGGCAGTGTTGTTCGTTTCCGCATTAATCCCAGTGATTCTTCAGTTATTTTTGTAAAAACAATACCATAG 684 0.367 MGFVKKASTSKPKISKKIPSLFTSEHANELGNEATLIDPVKNEIHCVVRKYGENVYFSHGWKRIKDIYDLGEGGWLKFTYLEDTDFKMRVFDRDLVEVQYPRPATDYLLSAHIDPDFIPFPDYVPPNFDDILYYDKQLTEYTASKYSLNLPTDLCLRFAGKPVNCVLRDHDGYDFPVNLSWSKNKKIAYITKGWKDFCTSKGLKIGSVVRFRINPSDSSVIFVKTIP. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03537 227 Gene3D - 132 226 IPR015300 -
Seca11g03537 227 Gene3D - 1 95 IPR015300 -
Seca11g03537 227 SUPERFAMILY DNA-binding pseudobarrel domain 130 219 IPR015300 -
Seca11g03537 227 PANTHER B3 DOMAIN-CONTAINING 16 117 - -
Seca11g03537 227 Pfam B3 DNA binding domain 138 215 IPR003340 GO:0003677
Seca11g03537 227 SMART B3_2 134 226 IPR003340 GO:0003677
Seca11g03537 227 SMART B3_2 3 94 IPR003340 GO:0003677
Seca11g03537 227 CDD B3_DNA 136 212 IPR003340 GO:0003677
Seca11g03537 227 SUPERFAMILY DNA-binding pseudobarrel domain 15 94 IPR015300 -
Seca11g03537 227 ProSiteProfiles B3 DNA-binding domain profile. 133 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03537 Seca-Chr11 88856968 88857884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03537 8 105 B3 DNA Binding Superfamily AT4G01580 27.551 6.87e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g03537 B3 6.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03537 - K08738 tpra:123885279 65.0846