Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03520 ATGGCATCTGAAGGCTTCACCGACAAGAACACTCTGTTCAGGAAACTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGTAATGCGAAGAACCCAACCTGGGCATCCGTCACGTATGGGATCTTTCTCTGCATCGATTGCTCCGCCGTTCATCGTAGTCTCGGCGTGCACATCAGCTTCGCGAGATCTACAAATTTAGACTCATGGAGTTCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAATAACCGTGCACAAGTTTTCTTTAAGCAACATGGTTGGACCGATGGTGGTAAAATAGAGGCGAAGTATACATCCAGGGCTGCAGAGTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGTCTGAGGAGGCAAGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAAGGGGCTAATGGACTTCCTCATGTGAGGACAGATGAAGTGCCAAAAGAAATCACTCTTGTGGAAAGGCCAGAAAAGGCTGAGAGCACTTCTTCACCTCGAGCTTCGCATACAGTAGTTTCAAGTACTGTGAAGAAGCCTATCGGGGCCAAAAAAACTGGGAAGGGTGGGGGGCTTGGTGCCCGAAAGCTCACTAGAAAGCCAAGTGAGTCTCTCTATGACCAGAAGCCTGAAGAACCACCTGCTCCAGTTTCATCCTCAACAAACAACAATTTACCTTCTGGGCCATCTCTGACATCCCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACTCTGGAGGTTCAAATGTACTCAGTCACGTTTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGATTTCCGAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATTAGTGATGATTCTAGATTCCAGATTGCATCACATCATGTGGCTGCAATATTGCAGTTGTGGTAG 951 0.4585 MASEGFTDKNTLFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFARSTNLDSWSSEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMSEEASLPSSPVASQSAQGANGLPHVRTDEVPKEITLVERPEKAESTSSPRASHTVVSSTVKKPIGAKKTGKGGGLGARKLTRKPSESLYDQKPEEPPAPVSSSTNNNLPSGPSLTSRFEYVENVQSSELNSGGSNVLSHVSPPKSSSFFADFGMDSGFPKKSGPSSSKVQISDDSRFQIASHHVAAILQLW. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03520 316 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Seca11g03520 316 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Seca11g03520 316 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Seca11g03520 316 MobiDBLite consensus disorder prediction 151 171 - -
Seca11g03520 316 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Seca11g03520 316 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Seca11g03520 316 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Seca11g03520 316 MobiDBLite consensus disorder prediction 128 146 - -
Seca11g03520 316 CDD ArfGap_ArfGap2_3_like 8 123 - -
Seca11g03520 316 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Seca11g03520 316 MobiDBLite consensus disorder prediction 128 240 - -
Seca11g03520 316 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 299 - -
Seca11g03520 316 MobiDBLite consensus disorder prediction 222 240 - -
Seca11g03520 316 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
Seca11g03520 316 Pfam Putative GTPase activating protein for Arf 12 107 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03520 Seca-Chr11 88364891 88369498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03520 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 1.26e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03520 K12493 K11855 gmx:100785169 494.197