Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03519 ATGGCGTCCGACAGCTTCACCGACAAGAACACTGTGTTCAGGAAACTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCAACCTGGGCATCTGTAACGTATGGAATCTTCCTATGCATCGATTGCTCTGCCGTTCATCGTAGTCTCGGCGTGCACATCAGCTTCGTGAGATCTACAAACCTGGACTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATTGAAGCGAAATATACATCCAGAGCTGCAGAGTTGTATAGGCAAATTCTCTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGGAAGCCTGCCTGCATCACCTGTTGCTTCTCAGTCTGCCCAAGGGGCTAATGGACTTACTGATGTCAGGACCAGTGAAGTACCGAAAGAAAGCACTTTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCAAGAGCTTCACATACAGTAGTATCAAATACTGTAAAGAAGCCTATTGGAGCTAAAAAACCAGGGAAGAGTGCGGGGCTTGGTGCTCGTAAGCTAACTAGAAAGCCAAGTGAGTCTCTCTATGAGCAGAAACCTGAAGAACCACCTGCTCCAGTTTCATCCACAACAAACAACAATTTGTCTGCTGGGCCATCTCTGACATCTCGGTTTGAGTATGTTGAAAATGTCCAATCATCTGAGTTGAATTCTGGAGGTTCACATGTCATTAGTCACGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGCTTTCCAAAGATGCCTGGGCCCAGCTCCTCAAAACTGCAAGTTCAGGAATCTGATGAAGCAAGGAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAACAAGGCAGCAGATGCGGACGCTAAAGTTACTTTGTCAAAGTTTTCAGGTTCGACTGCAATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGATAACTCCCCCATTGATCTTGCTGCCAGCGACCTCCTCAATCGATTATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCCTTCGCCTCCACCTTGATGACAGATCTCCAGGACCGAATCCTCTAA 1218 0.4573 MASDSFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEGSLPASPVASQSAQGANGLTDVRTSEVPKESTLEKPEKPESTSSPRASHTVVSNTVKKPIGAKKPGKSAGLGARKLTRKPSESLYEQKPEEPPAPVSSTTNNNLSAGPSLTSRFEYVENVQSSELNSGGSHVISHVSPPKSSSFFADFGMDSGFPKMPGPSSSKLQVQESDEARRKFSNAKSISSSQFFGDQNKAADADAKVTLSKFSGSTAISSADLFGDSRDNSPIDLAASDLLNRLSFQAQQDISSLKNIAGETGKKLSSFASTLMTDLQDRIL. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03519 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Seca11g03519 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Seca11g03519 405 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Seca11g03519 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Seca11g03519 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Seca11g03519 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Seca11g03519 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Seca11g03519 405 MobiDBLite consensus disorder prediction 221 237 - -
Seca11g03519 405 MobiDBLite consensus disorder prediction 155 170 - -
Seca11g03519 405 MobiDBLite consensus disorder prediction 131 237 - -
Seca11g03519 405 MobiDBLite consensus disorder prediction 133 154 - -
Seca11g03519 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Seca11g03519 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Seca11g03519 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 405 - -
Seca11g03519 405 Pfam Putative GTPase activating protein for Arf 11 106 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03519 Seca-Chr11 88274314 88282933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03519 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 9.14e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03519 K12493 K11855 gmx:100785169 712.22