Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03494 ATGTCTCCACCACTGCTGGTTACTGAAGAGGAAGGGCAGAGCAAAGCCTCAACAATAGCATCTGCATCTTCACAATCCCTGGATTGCTTCTCCCAAACTGGGGCTGGACTGAAAGAGCGCAATTACCTGGGATTGTCGGATTGCTCATCGGTCAACAGTTCTACTGTCCCAAACTTGTCTGATGAGAAAAAGGATAACCTAAATTTGAAGGCTACAGAGTTGAGGCTGGGCCTTCCTGGGTCCCAATCACCTGAAAGGGATCCAGATCTTTTCTCATTGGGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAGAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGATGCAATGGATGGGTTCCCTGAGGGGAAATTTCCTGGTAATGCAGGGATAAACATAATGCTATCACCTAGACCTTCAGGAGCTCCATCAACCACAATTAAAGAAATACCAAGCAAGGTGTTACAAGAAAGTCCTTGTGCAGCAAATGGAACTGGTCATAACCATACAGGGGCTTCTATCAGTGGCAGTGCACCTGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACTTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAAGGTTCTGATGCCATTGGCTTAGACAAGGAAACTATTATTACTAGAGCCTGCGGTTGA 1059 0.4485 MSPPLLVTEEEGQSKASTIASASSQSLDCFSQTGAGLKERNYLGLSDCSSVNSSTVPNLSDEKKDNLNLKATELRLGLPGSQSPERDPDLFSLGSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADAMDGFPEGKFPGNAGINIMLSPRPSGAPSTTIKEIPSKVLQESPCAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLDKETIITRACG. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03494 352 FunFam Auxin-responsive protein 228 345 - -
Seca11g03494 352 Gene3D - 230 347 - -
Seca11g03494 352 SUPERFAMILY CAD & PB1 domains 231 334 - -
Seca11g03494 352 Pfam AUX/IAA family 72 341 IPR033389 -
Seca11g03494 352 MobiDBLite consensus disorder prediction 175 195 - -
Seca11g03494 352 ProSiteProfiles PB1 domain profile. 233 337 IPR000270 GO:0005515
Seca11g03494 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 340 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03494 Seca-Chr11 87193483 87199262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03494 247 333 B3 DNA Binding Superfamily AT1G19220 32.184 3.12e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca11g03494 AUX_IAA 6.1e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03494 K14484 - gmx:100500373 601.282