Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03485 ATGGAGCTTTCTCATCTTGGTTTCCTTGAGGAGTTAGTAGTTCCAAGAAGAGACATATGGAATGCTTCTTCCACTGGGTTTAGTGAGTTAATTCTTAGTGGTTGGAGCTTTGATTCTATTGTGGAGAACCCAGCTTTGGCTACTTCAAGCTCCTCATTTGCTTCATTTTCAACACCATTAGACCATAGATTTGAGTGTCCTTACAGCAGTGAAGCAACATACCATTTTTCTGATGGGTTCACAATGCCAGAGATTGACTCATCATATACAAGGAATGATGACCCAGCACCACTTCCAAAACAGGAACATAACCCATCAGTGGAGGATGAAGAGATTGGTTTTCTAGGCAGTGGTGACAAGAGCTTGGAGGAAACAAAGTGTGGCTGCAAAATTGAGGAGCAGAGTACTGAGATTCAAGTCTTCAACATGGGGGTGTGTGATGGAGAGAAAAAATCCAAGTCCAAGAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCTATGCTGAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGATACTATAGATTACATGAAAGAGCTTTTGGAAAGGATTGGCAAGTTGCATGAAGGAGAAGGGGAAGAGGGCACAAATCAGATAAATCTCTTGGACATTTCCAAGGAACTCAAGAAGCCAAATGAAGTAATAGTAAGAAATTCCCCCAAGTTTAATGTTGAGAGGAGAGATCAGGACATGAGGATCAGCATCTGCTGTGCCATAAGGCCAGGATTGTTACTATCAACAATGAATACACTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGTTTCAATGACTTCTCAATGGAAGTATCTTGTTCAGAGGTTTATGTCCTGAGCTCACATATGCTTGAAATTAAACATATTTCTCACTCAAACTGA 972 0.4146 MELSHLGFLEELVVPRRDIWNASSTGFSELILSGWSFDSIVENPALATSSSSFASFSTPLDHRFECPYSSEATYHFSDGFTMPEIDSSYTRNDDPAPLPKQEHNPSVEDEEIGFLGSGDKSLEETKCGCKIEEQSTEIQVFNMGVCDGEKKSKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLHEGEGEEGTNQINLLDISKELKKPNEVIVRNSPKFNVERRDQDMRISICCAIRPGLLLSTMNTLEALGLEIQQCVISSFNDFSMEVSCSEVYVLSSHMLEIKHISHSN. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03485 323 MobiDBLite consensus disorder prediction 103 119 - -
Seca11g03485 323 Gene3D - 147 209 IPR036638 GO:0046983
Seca11g03485 323 CDD ACT_UUR-ACR-like 261 301 - -
Seca11g03485 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 77 306 - -
Seca11g03485 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Seca11g03485 323 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Seca11g03485 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 218 IPR036638 GO:0046983
Seca11g03485 323 MobiDBLite consensus disorder prediction 85 119 - -
Seca11g03485 323 SMART finulus 165 214 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03485 Seca-Chr11 86525620 86527591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03485 143 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 62.805 2.00e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g03485 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03485 - - gmx:100806571 454.136