Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca11g03482 | ATGGAGTCAAATAATGAAATTCAACCATTCATGACAATGCCTAGAATGGAAGATTTCTTAGATATTGAAATAGAGACTCAAGATTCCTCTTCACTCAACCAGATATATAATTATGGGTTTATCCCTATCCATTTCAACAACCAACAAGATCTGGAAACTACAAATAAGGGCTTTAAGTTGGATGACTTGGTCTCTAACATCAAAACTCAAGTTGCTACTCCCACGGAATTTGGAAATGTGTCTGATGATGATAAGGCCACTGTTATGGTGGATTCTGATGCCTCAAAGAAAATTACACACACTGTTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAAGCACCGTTGTACAGGTAGATATGATGCATATTTGTGGGATAATAAGTGCAAAAATGAGGGCCAGGCCAAGATAGGGCGTCAAGCTGGGTATGACAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTAGCAGCTCTAAAGTATTGGGGACAATCAGCCACCACTAACTTTCCTGTTTCCAATTATGCAAAGGATTTGGAGAAGATGCAAAATGTAGGAAAGCAAGAATATATTGCATCATTGCAAAGGAATAGCGGTGCCTTTTCAAGGGGAGCTTCCATATATAGAGGTGTTTCAAGGCACCGTAGAGGAGGTAGATGGCAAGCAAAGATTAGCAGAGTTGCAGGAAAAAAAGATTTTTACTTGGGAACATTTGATAGTGAAGAGGAAGCGGCACAAGCATATGACATTGCGGCCATCAAGTTTAGAGGTGCAAACACTGTAACCAATTTTGAGATAAGTAGCTATGATGTGGAAGCTATATCAAGTAGTTCTCTTCCAGTTGGTGGGGCAGCAAAACATATGAGGTTTTCTGAGGAATTGGAGAAGATAGCTCCTATGACAAGTGGTCATCAAACTCATAGTACAAATGTGAGTAGTACCATCGATATCCCAACCATTCAGCCACTTGCTGCTATACCAAATGATATTGCAACAACATTTTATGACCCAAACCCCTTCCACCTACTTCATCCTACCAACCAATTTCATCCTACCAATGATGGCAGTGGCACAACAGAGCCTTCTGGAACTCCGACTAATGCAGCCACACTGAATGAACTGGAAAAAGTAGTTGGGTTCTATATGCGGCCTCATCAGTCCTACTGA | 1167 | 0.4096 | MESNNEIQPFMTMPRMEDFLDIEIETQDSSSLNQIYNYGFIPIHFNNQQDLETTNKGFKLDDLVSNIKTQVATPTEFGNVSDDDKATVMVDSDASKKITHTVGKRTSIYRGVTKHRCTGRYDAYLWDNKCKNEGQAKIGRQAGYDKEEKAARAYDLAALKYWGQSATTNFPVSNYAKDLEKMQNVGKQEYIASLQRNSGAFSRGASIYRGVSRHRRGGRWQAKISRVAGKKDFYLGTFDSEEEAAQAYDIAAIKFRGANTVTNFEISSYDVEAISSSSLPVGGAAKHMRFSEELEKIAPMTSGHQTHSTNVSSTIDIPTIQPLAAIPNDIATTFYDPNPFHLLHPTNQFHPTNDGSGTTEPSGTPTNAATLNELEKVVGFYMRPHQSY. | 389 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca11g03482 | 388 | CDD | AP2 | 206 | 267 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 207 | 265 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 76 | 301 | - | - | |
Seca11g03482 | 388 | SMART | rav1_2 | 108 | 177 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | SMART | rav1_2 | 207 | 271 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | PRINTS | Ethylene responsive element binding protein signature | 208 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | PRINTS | Ethylene responsive element binding protein signature | 247 | 267 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | CDD | AP2 | 107 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 108 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | Gene3D | AP2/ERF domain | 108 | 173 | IPR036955 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | Gene3D | AP2/ERF domain | 207 | 267 | IPR036955 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | Pfam | AP2 domain | 207 | 257 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | Pfam | AP2 domain | 108 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Seca11g03482 | 388 | SUPERFAMILY | DNA-binding domain | 107 | 173 | IPR016177 | GO:0003677 | |
Seca11g03482 | 388 | SUPERFAMILY | DNA-binding domain | 206 | 267 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca11g03482 | Seca-Chr11 | 86234025 | 86237680 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca11g03482 | 13 | 388 | AP2-EREBP Transcription Factor Family | AT5G65510 | 44.695 | 7.06e-97 | 294 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Seca11g03482 | AP2 | 4.2e-07 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca11g03482 | K09285 | - | twl:119995400 | 374.785 |