Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03475 ATGGCTGCCAGTTTCTGCTATTCATATATTCTTCCACTGTTCTTATTGTCCCTCCTTTTCTTAAATTTACCTGCTAATTCAATTCACTTCCAAATTCCCCACTTTAATCCTGGTGATGCCAACATACTCTACCTAGGATCTGCAGCACCACGTGATGGAGAAGTTGAATTTAACATTAATGAGGCGTATACATCTCAAGTTGGATGGGCCATCTATGCCAAAAGTGTGTTACTTTGGGATTCGGGCACAAGTCAACTCACTGACTTCACAACGCATTTCACTTTCATTATCGACACTCTTGCCCAATCTCGTTATGGCCATGGACTTGCCTTCTTCCTTGCTCCTGTTGGATTTGAAATCCCACCCAATTCTGCCGGTGGCTTTCTGGGCCTATTTAACACCACAACTATGCATTCATCCGACAACCAAATTGTTCACGTGGAGTTCGATTCTTTCCCAAATTCTGAATTTGATGAAACGGTGGAGCATGTAGGAATCAACAATAACTCAATTTCTTCGTCAGTATGGACACGTTGGAATGCTAGTCTACACAGTGGAGACACTGCTGAGGTATGGATTCGCTACAATTCTACAACCAAGAATTTAAGCGTGTCTTGGAATTACCAAAGCACCTCTGTTCCTCAAGAAAATACTAGTCTTTCCTATCAAATTGATTTAATGAAGGTCCTCCCTGAATGGGTTACAGTAGGATTTTCAGCTGCTACAGGAAAGAAGGAAAGCAAAAAAACAGAGGCTATGAATTTAGCCTCAATCAATGATGACCTCGAAAGAGGAGCAGGGCCAAGAAGGTTTTCCTACGGAGAGCTTGCATTGATTACCAATAACTTCTCCCAGGACAGGAAGTTGGGTCAAGGTGGGTTTGGAGCTGTTTACAGAGGTTACTTTGCTGATTTAGATTTAACAGTTGCTGTGAAGAAAATATCAAGGGGCTCTAGACAAGGGAAGAAAGAGTATGTAACAGAGTGTCATGACAGAGGTGAGTTTCTGCTTGTGTATGAGTTCATGCCAAATGGAAGCCTTGATTCTCATTTATTTGGTAAAAGAACAACACCTCTGCCTTGGAGCCTAAGGCACAAGATAGCTCTTGGATTGGCCTCTGCAGTGCTCTATCTTCATGAAGAATGGGAAAGGTGTGTGGTCCATAGGGATATCAAATCAAGCAATGTTATGTTGGATTCTAGTTTCAATGTCAAGCTGGCCAGCAAAGAGTCAGATGTCTATAGCTTTGGGGTAGTTGCTTTGGAGATTACTACTGGGAAGAAAGCAGTGGATGTTATGGAGGACAAAGATGGAGAGAAGGGATTGATTGAGTGGGTTTGGGATCATTATGGCAGAGGGGAACTGCTAATGGCAATGGATGAGAGTTTGCAGAAAGATTTTGATGGGAAACTTGTTGAGTGTTTGATGATTGTGGGACTGTGGTGTGCACACCCTGATGGAAATCTCAGACCATCAATAAGACAAGCAATTCAAGTGCTTAATTTTGAGGCTGCTCTGCCAAACCTTCCACCAAAGAGGCCTGTTGCAACATACCACGCTCCTACACCATCCGTGAGCTCGAGAGAAGCTTCCATAACCACTAGCCTTCATATTGGTCGTTAA 1623 0.4295 MAASFCYSYILPLFLLSLLFLNLPANSIHFQIPHFNPGDANILYLGSAAPRDGEVEFNINEAYTSQVGWAIYAKSVLLWDSGTSQLTDFTTHFTFIIDTLAQSRYGHGLAFFLAPVGFEIPPNSAGGFLGLFNTTTMHSSDNQIVHVEFDSFPNSEFDETVEHVGINNNSISSSVWTRWNASLHSGDTAEVWIRYNSTTKNLSVSWNYQSTSVPQENTSLSYQIDLMKVLPEWVTVGFSAATGKKESKKTEAMNLASINDDLERGAGPRRFSYGELALITNNFSQDRKLGQGGFGAVYRGYFADLDLTVAVKKISRGSRQGKKEYVTECHDRGEFLLVYEFMPNGSLDSHLFGKRTTPLPWSLRHKIALGLASAVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLASKESDVYSFGVVALEITTGKKAVDVMEDKDGEKGLIEWVWDHYGRGELLMAMDESLQKDFDGKLVECLMIVGLWCAHPDGNLRPSIRQAIQVLNFEAALPNLPPKRPVATYHAPTPSVSSREASITTSLHIGR. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03475 540 PANTHER - 407 504 - -
Seca11g03475 540 SUPERFAMILY Protein kinase-like (PK-like) 267 520 IPR011009 -
Seca11g03475 540 FunFam Lectin-domain containing receptor kinase A4.3 406 520 - -
Seca11g03475 540 ProSitePatterns Legume lectins alpha-chain signature. 230 239 IPR000985 -
Seca11g03475 540 ProSiteProfiles Protein kinase domain profile. 283 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03475 540 Gene3D Transferase(Phosphotransferase) domain 1 342 407 - -
Seca11g03475 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Seca11g03475 540 Gene3D Transferase(Phosphotransferase) domain 1 408 521 - -
Seca11g03475 540 CDD lectin_legume_LecRK_Arcelin_ConA 28 243 IPR001220 GO:0030246
Seca11g03475 540 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 243 IPR013320 -
Seca11g03475 540 SMART serkin_6 283 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03475 540 ProSitePatterns Protein kinases ATP-binding region signature. 289 313 IPR017441 GO:0005524
Seca11g03475 540 Gene3D Phosphorylase Kinase; domain 1 268 331 - -
Seca11g03475 540 Gene3D - 25 263 - -
Seca11g03475 540 Pfam Legume lectin domain 28 247 IPR001220 GO:0030246
Seca11g03475 540 Pfam Protein kinase domain 284 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03475 Seca-Chr11 85763130 85765081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03475 8 519 Receptor kinase-like Gene Family AT5G10530 47.619 4.79e-178 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca11g03475 Lectin_legB 7.3e-62 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03475 - - jre:108994233 667.151