Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03466 ATGGATACAAACTTGACTCTAAAAGTTGGTCTTGAATTCGATAATTTAGAAGATGCATGGAAATTTTGGGTGAAATACGGAGGCATAAAAGACTTTGGAGTTAGAAAACAATATTCAAGCAAGAGTAAGAAAGATGGTTCTATTACGTCTTACTTATATGTTTGTTGTAAGGAGGGTGTACGAAGACCAGACTCAAGGGATTATAAAACGACCAATCCAAAACCTGAGACAAGAACGGGGTGTACGGCTAAAATGAAAGTCAAACGATTCAACGAAAAATACAGAGTGATTAATTTTGTTGATGATCATAATCACCCACTGCAACCACCAGAAACAGTGCATATGTTAGCTTCTCAACGAAGAATAACTGAACATCAAGCATATGAACTTGAAGTGGCAGAAGACGCAGGGATTCAACAGAAAGCCTCATTTGATTTGATGAGTAAATATGTAGGAGGTAGAGAGAATCTAGGGTATACTAGACAAGATGCAAATAATTATTTGAATTCGAGGAGGCGGCGAGATATGGCTTATGGTGAAGCTGGGTATTTGCTACAATATTTCCAACAACAATTGATAGATAATCCTTCATTCTTCCATGCATACCAAATGGATTTGGAAGAGCAAATAACAAATGTATTTTGGGCCGATGCAGGAATGTTGTTTGACTATCATTGCTTTGGTGATGTCATTTCTTTGGATACCACATATTGTACAAATGGAGATCATCGACCCCTTGCAATTTTCTCGGGATTCAACCATTATAGAGGAGGGGTGATCTTTGGGGCAGCTTTACTATATGATGAGACTACAGACTCGTTCAAATGGCTTTTGGAAACATTTTTGCAGGCACACAACCAGAAAAAACCACAGACTGTTTTTACTGACCAAGACCAAGCCATGGCAAGAGCACTGAGGGAGGTTATACCAGAGACAAAGCATGGTTTATGCACATGGCACATAATGAAAAATGGAATCAAGCATCTTGGCAATTTAATGAAAGATGGATCACATTTCTTACGTGATTTTAAGAAGTGTATGTATGATTGTGAGAAAGAAACAGATTTTGAAGCCTCGTGGAGAGCCTTGCTGTTGACATATAATGTGGAAGAAAACACTTGGTTGAAATCAACATATCAAATCAAAGAGAAATGGGCAGCATGTTATATGAAGAATTCTTTTACGCTTGGCATGCGAAGCACACAATTAAGTGAAAGCATTAATTCTGATATAAAGAGCTGCACAAGACCAAACTTGAACATCAGTCAATTCTTTAAGCAATTTGAACGGGTTGTTGAGGAAAAGCGATATAATGAGTCAAAGCAAGATTATGAGATGCATCAGAAGTTGCCAAGAATGATAGTACAAAGTTCACCTTTGATTCGACAACTTTCTCAAGTGTACACTCCTCCTATATTCAATTTGTTCCAACGAGAGTGGGATTTAATAGCTGCCACAAATATCTCTAAAAGAAAAGAAACAGAAGCTCAGTGTGACTATGTCATAACAATGGTGGATGAAAAAGAAGAGTGGAGAGTTAATTATGAATCCCATATTGAGGTTGGAGAATGGACAATTACTTGTACTTGTAGGAAGTTTGAACAGTGGGGAATATTGTGTTGTCATTCATTGAGAATATTATTTCACAAGGATGTCAAGCTTCTTTCAAACAAATATATATTGAAGCGGTGGACAAGAGAAGCAAGATCTGATACGTTCAATGATAATAATGGAAAGCAAATTGTTCTTGATCCTAGGTTGGAAAGTTCAAATAGAAAGAAGCAATTATGCCCCATGCTTTTAAGATTGGCGGAAGACGCATCTGAGTGTCCAGAAGCATCTGCTTTAGTCTATCAAGGGGTGTTAGAGCTTAGCAAGAAAGTGGCTGAACTTCGATTGAACCAACAATCACATGATACTCATGATTCCACATGTGAGGCTACATAG 1947 0.3765 MDTNLTLKVGLEFDNLEDAWKFWVKYGGIKDFGVRKQYSSKSKKDGSITSYLYVCCKEGVRRPDSRDYKTTNPKPETRTGCTAKMKVKRFNEKYRVINFVDDHNHPLQPPETVHMLASQRRITEHQAYELEVAEDAGIQQKASFDLMSKYVGGRENLGYTRQDANNYLNSRRRRDMAYGEAGYLLQYFQQQLIDNPSFFHAYQMDLEEQITNVFWADAGMLFDYHCFGDVISLDTTYCTNGDHRPLAIFSGFNHYRGGVIFGAALLYDETTDSFKWLLETFLQAHNQKKPQTVFTDQDQAMARALREVIPETKHGLCTWHIMKNGIKHLGNLMKDGSHFLRDFKKCMYDCEKETDFEASWRALLLTYNVEENTWLKSTYQIKEKWAACYMKNSFTLGMRSTQLSESINSDIKSCTRPNLNISQFFKQFERVVEEKRYNESKQDYEMHQKLPRMIVQSSPLIRQLSQVYTPPIFNLFQREWDLIAATNISKRKETEAQCDYVITMVDEKEEWRVNYESHIEVGEWTITCTCRKFEQWGILCCHSLRILFHKDVKLLSNKYILKRWTREARSDTFNDNNGKQIVLDPRLESSNRKKQLCPMLLRLAEDASECPEASALVYQGVLELSKKVAELRLNQQSHDTHDSTCEAT. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03466 648 Pfam SWIM zinc finger 500 550 IPR007527 GO:0008270
Seca11g03466 648 Pfam FAR1 DNA-binding domain 21 109 IPR004330 -
Seca11g03466 648 SMART 26again6 526 553 IPR006564 GO:0008270
Seca11g03466 648 ProSiteProfiles Zinc finger SWIM-type profile. 515 551 IPR007527 GO:0008270
Seca11g03466 648 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 629 IPR031052 GO:0006355
Seca11g03466 648 Pfam MULE transposase domain 230 324 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03466 Seca-Chr11 85323632 85325578 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g03466 MULE 1.2e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03466 - - pcin:129316824 894.419