Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03454 ATGAGAGCCGTTGATCAAACACAAGTTGGTGATGGGTTATCCTTCTTCATTGCACCATTTCAATCTGAAATCCCAACCAATTCATCTGGTGGGTACCTTGGTCTTTTCAACAAGGAAGATGCATTCAACACTAGCAAAAATCAAATAGTTGCAGTTGAGTTTGATAGTTTTAAGAACGATTGGGATCCAAGCTCTGATCATGTAGGAATCAATGTTAACTCCATTCAATCAGTTACAAATGTGACATGGAAGAGTAACATTAAGAATGGGTCAATTGCTAATGCTTGGATTTCATATAACTCTACCACAAAAAATCTTTCTGTTTACCTTACTTATGCCAATAATCCAAGCTTTGATGGTGATTCTAGTCTTTGGCATGTAATTGATTTGAGGGATGTTTTGCCAGAAACTGTTAGAATTGGTTTTTCTGCTGCCACAGGTCAATGGATTGAAATACACAACATTCTATCTTGGTCATTCAATTCAACCTTGGACAACAATGGTGATGGGGAAAACAAGGTTGGTTTAGGCGTTGGTTTAAGTGTTGGTTTTGGTTCTTTAACTTGTGTTGTAGGCCTGCTATGGTTCACCTTATGGAGAAAAAGAAAAGGGCCTAGTTTTGATGCTTCTATGGATGATGAATTTGAGAGAGGAACTGGTCCAAAAAGGTTCACTTACAGGGAACTAAGCAATGCAACAAACAGCTTTGCAGAAACAGGAAAGCTTGGAGAAGGAGGATTTGGAGGTGTTTACAAAGGTTTTCTTGGTAACCCCAACCATGAAATTGCAGTGAAAAGGATTTCAAAAGGATCTAAACAAGGAAAAAAGGAATACATATCAGAGGTGAGAATAATTAGCCGTTTGAGACATAGAAATTTGGTTCAACTCATAGGGTGGTGCCATGAGCAAGGTGAGCTGCTTCTTGTTTATGAATATATGCCTAATGGAAGCCTTGATTCCCATCTATTTGGAAATGGGGTGATGCTTACCTGGATAGTGAGGTACAAAGTAGCCTTAGGTTTGGCATCTGCTCTTCTTTATCTTCATGAAGAGTGGGAGCAATGTGTGGTGCATAGAGATATTAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAGCTTGGTGATTTTGGTCTTGCAAGGCTGGTTGACCATGAACTTGGCTCTCAAACTACTGTTTTGGCAGGCACAATGGGGTACCTAGCACCAGAGTGTGTGACCACAGGGAAATCTAGTAAGGAATCTGATGTTTATAGCTTTGGTGTTGTTGCACTTGAAATCACATGTGGTAGGAGACCAGTTGAAGTGAAACAAGAGCCTGGTAAAGTTAGGCTTGTAGAGTGGGTGTGGGATCTCTATGGAAAAGGGAAACTTGCTGAAGCAGCTGATGAGAGGCTAAGTTTGGAATTTGATGAGAAGCAAATGGAATGCTTGATGGTAGTTGGGTTGTGGTGTTGTCATCCTGATCATACAATGAGGCCATCTATTAGGCAAGTGATAAATGTCCTCAATTTTGAAGCTCCTTTGCCTAGTCTTCCAGCAAAGTTGCCTGTGCCAATGTACTTTGCACCTCCCATGGATATGTGCAGATTCTCCTACAATACATCTGGCCTCACAACCACAACCAAAGGATCTTCCTACTCATCAATGTCAGCGGGGTCTAGAAAATCTCTATTATAG 1686 0.4057 MRAVDQTQVGDGLSFFIAPFQSEIPTNSSGGYLGLFNKEDAFNTSKNQIVAVEFDSFKNDWDPSSDHVGINVNSIQSVTNVTWKSNIKNGSIANAWISYNSTTKNLSVYLTYANNPSFDGDSSLWHVIDLRDVLPETVRIGFSAATGQWIEIHNILSWSFNSTLDNNGDGENKVGLGVGLSVGFGSLTCVVGLLWFTLWRKRKGPSFDASMDDEFERGTGPKRFTYRELSNATNSFAETGKLGEGGFGGVYKGFLGNPNHEIAVKRISKGSKQGKKEYISEVRIISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGNGVMLTWIVRYKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRRPVEVKQEPGKVRLVEWVWDLYGKGKLAEAADERLSLEFDEKQMECLMVVGLWCCHPDHTMRPSIRQVINVLNFEAPLPSLPAKLPVPMYFAPPMDMCRFSYNTSGLTTTTKGSSYSSMSAGSRKSLL. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03454 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Seca11g03454 561 ProSitePatterns Legume lectins beta-chain signature. 50 56 IPR019825 -
Seca11g03454 561 Gene3D - 2 175 - -
Seca11g03454 561 PANTHER - 9 512 - -
Seca11g03454 561 Pfam Legume lectin domain 6 167 IPR001220 GO:0030246
Seca11g03454 561 FunFam L-type lectin-domain containing receptor kinase IX.1 221 312 - -
Seca11g03454 561 Pfam Protein kinase domain 237 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03454 561 CDD lectin_legume_LecRK_Arcelin_ConA 1 164 IPR001220 GO:0030246
Seca11g03454 561 FunFam Lectin-domain containing receptor kinase A4.3 313 525 - -
Seca11g03454 561 CDD STKc_IRAK 250 506 - -
Seca11g03454 561 ProSiteProfiles Protein kinase domain profile. 236 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03454 561 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524
Seca11g03454 561 Gene3D Phosphorylase Kinase; domain 1 221 312 - -
Seca11g03454 561 SUPERFAMILY Protein kinase-like (PK-like) 220 532 IPR011009 -
Seca11g03454 561 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 164 IPR013320 -
Seca11g03454 561 Gene3D Transferase(Phosphotransferase) domain 1 313 526 - -
Seca11g03454 561 SMART serkin_6 236 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03454 Seca-Chr11 84309189 84310898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03454 2 523 Receptor kinase-like Gene Family AT5G10530 54.833 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca11g03454 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03454 - - gmx:100777201 933.324