Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03449 ATGAAGATGAAGATGAAGTGCAAACGTGTTTGCTTCCTTTGGTGGTTTGGAATGACTGTTCAGCTCTGTTTCTTGCTCGGTGCCTGTTCTGAGAAGACATCATTCAGAAGAATATTAAGGGAAACCAACAGCGTGGAATCAACAGCTTCTCAATTTGAAGTCAAGTTGAATACAGAAAACGATGAACAGTTGGTGGTTGACAATGGCATTGTTTCCGTCACTTTGTCTAGTCCTGAGGGCTATGTCCTTGCAATGTCTTATAATGGAATTGACAACATACTTGAAGCTGAAAATGAAGAACAAGATAGAGGGTACTTCGACGTTGTTTGGAATGAACCAGGAAAACCGAGCAACTTTCAGAGAATCCACGGGACAAATTTTTCAGTTGTAGCAGCTGACGAGAATCAGGTGGAGATTTCATTTTTAAGAACATGGACTTCTTCCATGAATGGCTCAAGTGTCCCCATAAACATAGATATAAGATACATTTTTCGAAGTGGTGATTCGGGATTCTATTCATACGTAATATTCGATCGCCCTGAAGGATTGCCAGCAGTGGAAGTTGATCAAATTAGGACTGTTTTCAAACTCAACAAAGACAGGTTCCACTATATGGCTATATCAGATAACAGGCAAAGAAGCATGCCAACAATGAGAGACAGAGAAACGGGTCAAGCCCTGGCTTACCCTGAAGCAGTTCTTTTAACCAGACCAACTAACCCAGATTTTAGAGGAGAGGTGGATGACAAATACCAGTACTCATGTGAGAACACAGACAATACTGTTCATGGATGGATTAGTCTTGATTCTGATGCACCCGTGGGTTTCTGGATGATAACACCCAGTAACGAATTCCGAAATGCTGGACCCATCAAGCAAGACCTTACATCTCATGTTGGCCCCATCACCCTCTCTATGTTTGTGAGCACCCACTATGCTGGGAAGGAAGTAACCATGGCATTTCAAGAAGGGGAAACTTATAAAAAGGTTTTTGGCCCTGTATTTGTCTATGTTAACTCTGCTTCAAGCGATAATGATACACTATCACTATGGTCAGATGCTGTGCAGCAGCTATCCAATGAAGTCAAAAGCTGGCCTTACGATTTTCCTCAATCAGAAGATTACTTTCCACCCAATCAAAGGGGAACTGTATTAGGAAGATTACTAGTCCAAGATCGACACATCAAAGGAGGGAGATTTCAATATCCTAACAATGCTTATATTGGTCTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAAAGAAAGCAAGGTATATTTCTTTGGTGTTGGAGCCTATAAGAGAATTATTTGGTTTCTTGAACTTTTGGATTCTGTTGCAGCTAAAAATTGTTTTGAATTTTATGGCATTCACACAGGGGTATCAATTCTGGACTCGAGCTGA 1404 0.4124 MKMKMKCKRVCFLWWFGMTVQLCFLLGACSEKTSFRRILRETNSVESTASQFEVKLNTENDEQLVVDNGIVSVTLSSPEGYVLAMSYNGIDNILEAENEEQDRGYFDVVWNEPGKPSNFQRIHGTNFSVVAADENQVEISFLRTWTSSMNGSSVPINIDIRYIFRSGDSGFYSYVIFDRPEGLPAVEVDQIRTVFKLNKDRFHYMAISDNRQRSMPTMRDRETGQALAYPEAVLLTRPTNPDFRGEVDDKYQYSCENTDNTVHGWISLDSDAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYVNSASSDNDTLSLWSDAVQQLSNEVKSWPYDFPQSEDYFPPNQRGTVLGRLLVQDRHIKGGRFQYPNNAYIGLALPGEAGSWQKESKVYFFGVGAYKRIIWFLELLDSVAAKNCFEFYGIHTGVSILDSS. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03449 467 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 55 432 - -
Seca11g03449 467 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Seca11g03449 467 CDD RGL4_N 57 347 - -
Seca11g03449 467 Gene3D - 56 358 IPR014718 GO:0030246
Seca11g03449 467 SUPERFAMILY Galactose mutarotase-like 58 345 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca11g03449 467 Pfam Rhamnogalacturonate lyase family 47 247 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03449 Seca-Chr11 84056118 84063000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03449 54 441 Polysaccharide Lyase AT2G22620 58.247 1.95e-157 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03449 K18195 - gmx:100776664 699.893