LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03448	ATGTATGCTTTAGTTGAGCGTTCCGAAGGTTTTCCTGCACTTGAGATTGATCACATTAGGATGGTTTTCAAGCTCCAGATGGACAGGTTCCACTATATGGCTATAGCAGAAGATAGACAACGAGTGATGCCAACGGCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGTTTTAATAACCCAACCTAGTAACCCAGAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTATTGAGAACAAAGATAACAAACTTCATGGTTGGATTAACTTGGACTCCAACTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAGTGAGTTTCGTAACGGTGGGCCAACCCACCAAGCCCTTACTTCTCATGTTGGTCCTGTCACTCTCAATACACTTCATACCACTCACTACGCTGGGAAGGAGATAAACATGGCATTTGCAGAAGGGGAGTCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTGAACAAAGGAGATTCACAAGCCCTCTGGTCTGATGCTGCACAACAGCTGTCTGAGGAAATCAAAAGCTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCAAACACAACAAACGGGGAACAGTGCAAGGACAATTACTAGTCCAAGACAGGTACATTAACGGAGGGAGATTTCTATATGGCAACAATGCTTATGTTGGTCTGGCTCTGCCTGGAGATTTAGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAGGATAGGTCAATTCACAATTGAAAACGTCGTACCGGGGGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGGGATTACATATATAACACTACTATAACAATCACACCAGGATGTGTCATCCAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATTCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGAGTCTACATTGGAAAACCAGAACACAAGTTTAGGCAATATGGACTATGGCAGCGTTACACTGAGTTATATCCAAATCAGGACCTCATTTATAATGTCGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTCGCCCAACCACATGGGAGATTAGATTTCATCTACCATTTGTTATAAGAGGAAACTACACTCTACAACTTGCCTTGGCCTCAGCCGCAAGTTCTACCTTAGTGGTTCGGTTCAATAACCCTGTGGCTATTCCTGCGCACTTCTCTACGGGACTGATAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTGCACCGGCCTTACAAAATTGAAGTACCAAGCCATCTATTGGTAGAAGGAAACAACATAATCTATCTGAGGCAGGCCAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA	1530	0.4288	MYALVERSEGFPALEIDHIRMVFKLQMDRFHYMAIAEDRQRVMPTAEDRSTGQRLDYDEAVLITQPSNPELQGEVDDKYQYSIENKDNKLHGWINLDSNSNESVGFWMITPSSEFRNGGPTHQALTSHVGPVTLNTLHTTHYAGKEINMAFAEGESFKKVYGPFFVYLNKGDSQALWSDAAQQLSEEIKSWPYDFPKSDDFFKHNKRGTVQGQLLVQDRYINGGRFLYGNNAYVGLALPGDLGSWQRQCKGYQFWTQADRIGQFTIENVVPGDYNLYAWVPGIFGDYIYNTTITITPGCVIQLGSLIFSPPRNGPTIWEIGIPDRSAAEFYVPDHYPNLVNRVYIGKPEHKFRQYGLWQRYTELYPNQDLIYNVGVSDYRKDWFYAQVTRNIGNNTFRPTTWEIRFHLPFVIRGNYTLQLALASAASSTLVVRFNNPVAIPAHFSTGLIGQDNAIARHGIHGLHRPYKIEVPSHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLESPGT.	510

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g03448	509	Gene3D	-	203	303	-	-
	Seca11g03448	509	CDD	RGL4_N	1	175	-	-
	Seca11g03448	509	SUPERFAMILY	Galactose-binding domain-like	313	505	IPR008979	-
	Seca11g03448	509	CDD	RGL4_M	206	306	IPR029413	-
	Seca11g03448	509	Gene3D	-	9	186	IPR014718	GO:0030246
	Seca11g03448	509	Pfam	Polysaccharide lyase family 4, domain III	316	504	IPR029411	-
	Seca11g03448	509	Pfam	Polysaccharide lyase family 4, domain II	230	302	IPR029413	-
	Seca11g03448	509	CDD	RGL4_C	318	505	-	-
	Seca11g03448	509	SUPERFAMILY	Starch-binding domain-like	204	304	IPR013784	GO:0030246
	Seca11g03448	509	Gene3D	-	313	505	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03448	Seca-Chr11	83966748	83970663	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03448	2	507	Polysaccharide Lyase	AT1G09910	54.191	0.0	577

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03448	K18195		-	gmx:100792575	882.478

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