Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03448 ATGTATGCTTTAGTTGAGCGTTCCGAAGGTTTTCCTGCACTTGAGATTGATCACATTAGGATGGTTTTCAAGCTCCAGATGGACAGGTTCCACTATATGGCTATAGCAGAAGATAGACAACGAGTGATGCCAACGGCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGTTTTAATAACCCAACCTAGTAACCCAGAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTATTGAGAACAAAGATAACAAACTTCATGGTTGGATTAACTTGGACTCCAACTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAGTGAGTTTCGTAACGGTGGGCCAACCCACCAAGCCCTTACTTCTCATGTTGGTCCTGTCACTCTCAATACACTTCATACCACTCACTACGCTGGGAAGGAGATAAACATGGCATTTGCAGAAGGGGAGTCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTGAACAAAGGAGATTCACAAGCCCTCTGGTCTGATGCTGCACAACAGCTGTCTGAGGAAATCAAAAGCTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCAAACACAACAAACGGGGAACAGTGCAAGGACAATTACTAGTCCAAGACAGGTACATTAACGGAGGGAGATTTCTATATGGCAACAATGCTTATGTTGGTCTGGCTCTGCCTGGAGATTTAGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAGGATAGGTCAATTCACAATTGAAAACGTCGTACCGGGGGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGGGATTACATATATAACACTACTATAACAATCACACCAGGATGTGTCATCCAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATTCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGAGTCTACATTGGAAAACCAGAACACAAGTTTAGGCAATATGGACTATGGCAGCGTTACACTGAGTTATATCCAAATCAGGACCTCATTTATAATGTCGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTCGCCCAACCACATGGGAGATTAGATTTCATCTACCATTTGTTATAAGAGGAAACTACACTCTACAACTTGCCTTGGCCTCAGCCGCAAGTTCTACCTTAGTGGTTCGGTTCAATAACCCTGTGGCTATTCCTGCGCACTTCTCTACGGGACTGATAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTGCACCGGCCTTACAAAATTGAAGTACCAAGCCATCTATTGGTAGAAGGAAACAACATAATCTATCTGAGGCAGGCCAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA 1530 0.4288 MYALVERSEGFPALEIDHIRMVFKLQMDRFHYMAIAEDRQRVMPTAEDRSTGQRLDYDEAVLITQPSNPELQGEVDDKYQYSIENKDNKLHGWINLDSNSNESVGFWMITPSSEFRNGGPTHQALTSHVGPVTLNTLHTTHYAGKEINMAFAEGESFKKVYGPFFVYLNKGDSQALWSDAAQQLSEEIKSWPYDFPKSDDFFKHNKRGTVQGQLLVQDRYINGGRFLYGNNAYVGLALPGDLGSWQRQCKGYQFWTQADRIGQFTIENVVPGDYNLYAWVPGIFGDYIYNTTITITPGCVIQLGSLIFSPPRNGPTIWEIGIPDRSAAEFYVPDHYPNLVNRVYIGKPEHKFRQYGLWQRYTELYPNQDLIYNVGVSDYRKDWFYAQVTRNIGNNTFRPTTWEIRFHLPFVIRGNYTLQLALASAASSTLVVRFNNPVAIPAHFSTGLIGQDNAIARHGIHGLHRPYKIEVPSHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLESPGT. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03448 509 Gene3D - 203 303 - -
Seca11g03448 509 CDD RGL4_N 1 175 - -
Seca11g03448 509 SUPERFAMILY Galactose-binding domain-like 313 505 IPR008979 -
Seca11g03448 509 CDD RGL4_M 206 306 IPR029413 -
Seca11g03448 509 Gene3D - 9 186 IPR014718 GO:0030246
Seca11g03448 509 Pfam Polysaccharide lyase family 4, domain III 316 504 IPR029411 -
Seca11g03448 509 Pfam Polysaccharide lyase family 4, domain II 230 302 IPR029413 -
Seca11g03448 509 CDD RGL4_C 318 505 - -
Seca11g03448 509 SUPERFAMILY Starch-binding domain-like 204 304 IPR013784 GO:0030246
Seca11g03448 509 Gene3D - 313 505 - -
Seca11g03448 509 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 507 - -
Seca11g03448 509 Pfam Rhamnogalacturonate lyase family 1 75 IPR010325 -
Seca11g03448 509 FunFam Rhamnogalacturonate lyase B 203 303 - -
Seca11g03448 509 SUPERFAMILY Galactose mutarotase-like 16 172 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03448 Seca-Chr11 83966748 83970663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03448 2 507 Polysaccharide Lyase AT1G09910 54.191 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03448 K18195 - gmx:100792575 882.478