Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03443 ATGAGCTTCCAAGACATCGAAGCTGGCCGACCTTTCGGTTCGAGGCGTGGACCGATCAACGGGAAGCAAGACCCTACGCAAGCGGTGGCTGCCGGAATATTCCAGATCAACACGGCCGTGTCCACGTTTCATAGGCTCGTCAACACCATTGGAACCCCTAAAGACACCCCAGAGCTCCGCGAGAAGCTCCACAAAACAAGACTACATATTGGGCAGTTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGACATTGATCACCATGTTGGAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCGCAAGCAGTTCTTCCGTCAAGCTATACAGCTAGTGAAGTAGATGTTGGTTCTGATAAGACTCCAGAACAGCAAGCCCTTCTTGTGGAATCCAGGAGGCAGGAGGTTTTATTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTCAATGAGATTTTCAAAGATCTTGCTGTTCTTGTTCATGAGCAAGGAGCCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCTACTGCACAAGCAAAATCTCAACTTGCAAAAGCGTCAAAAACACAAAGATCAAATTCATCTTTGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATTGTGATCATAGTTCTTGCTGCTTAG 822 0.4465 MSFQDIEAGRPFGSRRGPINGKQDPTQAVAAGIFQINTAVSTFHRLVNTIGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHVGVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKTPEQQALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03443 273 CDD SynN 23 148 IPR006011 GO:0016020
Seca11g03443 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Seca11g03443 273 CDD SNARE_Qa 200 241 - -
Seca11g03443 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Seca11g03443 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca11g03443 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Seca11g03443 273 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g03443 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Seca11g03443 273 Gene3D - 20 133 - -
Seca11g03443 273 Gene3D - 173 273 - -
Seca11g03443 273 SMART tSNARE_6 175 242 IPR000727 -
Seca11g03443 273 FunFam Syntaxin-22 like 173 273 - -
Seca11g03443 273 Pfam SNARE domain 217 268 IPR000727 -
Seca11g03443 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Seca11g03443 273 FunFam Syntaxin-22 like 20 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03443 Seca-Chr11 83475738 83483844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03443 1 261 SNARE and Associated Proteins AT5G46860 77.778 5.32e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03443 - - gmx:547656 421.394