Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03438 ATGTCTTCGGCGCCGAACCCGGAGTTCGACACGGCACCGGCCACTGTAGCATACAACACCCCACCGGCATTGATAGCATTTACCCTAGCGGTCCTGGTTCTGTGCTTCGTGGCTTTCAGCATTGTGTACTTGTGCAAGCATTGTTTTTCAAACGTTATCCACACTTGGGAGTTTCAACGCACTGCCTCAGGCTCCATCATTCGTTTCGCACCTCACACGTCACCCACTAGAGGCCTCGACCCTTCGGTTCTGGAGGGCTTCCCCACCTTTTTATATGCCTCCGTGAAGGACCTCCGCAAGGAGAAGCACAGCCTGGAATGCGCCATTTGCTTGCTGGAGTTCGAGGACGACAGCATGCTTCGCTTCTTGACTGTTTGCTGCCATGTCTTCCACCAAGAATGCATTGACCTTTGGCTTCGTTCCCACAAGACATGCCCCGTTTGTCGAGCCGACCTTGATTCAATGCCAAAATGTGAGGAGGAGAACAACAACCATAATGCACAGCAGGAGCCCTCCTGCACTGATGATAACGTACGCATTCATGTCAAAGAAGGTGATGTCAGCGCTGGAGATCAAAGGCAACATCAACATGAAAGTATGAACATGCAGCAAAGGGCAGAACAGAGGTTTGCAAGGTCACACTCAACCGGACATTCCATAGTTATGATTAGAGGAGGAGGAGATGAAGAAAAAGAAGATGATAAATATACCTTGAGATTGCCGGAACATGTCATAAGAGGATGGCACAACAACTGCACCAGGAGTTGTAGAGGTTGCAGGGAGATGATTGGGCCTGCACCTTGTACTAATTGCGCCTTTCTTCAACCCCTATCTGCCTCCTCTCCCTTTGGTCATGCTCAACAATCTTGA 870 0.5 MSSAPNPEFDTAPATVAYNTPPALIAFTLAVLVLCFVAFSIVYLCKHCFSNVIHTWEFQRTASGSIIRFAPHTSPTRGLDPSVLEGFPTFLYASVKDLRKEKHSLECAICLLEFEDDSMLRFLTVCCHVFHQECIDLWLRSHKTCPVCRADLDSMPKCEEENNNHNAQQEPSCTDDNVRIHVKEGDVSAGDQRQHQHESMNMQQRAEQRFARSHSTGHSIVMIRGGGDEEKEDDKYTLRLPEHVIRGWHNNCTRSCRGCREMIGPAPCTNCAFLQPLSASSPFGHAQQS. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03438 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 156 IPR013083 -
Seca11g03438 289 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Seca11g03438 289 Pfam Ring finger domain 106 149 IPR001841 -
Seca11g03438 289 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Seca11g03438 289 PANTHER RING FINGER DOMAIN-CONTAINING 14 157 - -
Seca11g03438 289 SMART ring_2 107 148 IPR001841 -
Seca11g03438 289 SUPERFAMILY RING/U-box 96 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03438 Seca-Chr11 82207225 82208094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03438 22 246 Rapid Response to Elicitors AT2G35000 33.884 2.48e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03438 - - gmx:100815505 359.762