Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03415 ATGGGTAGTTTAGGGGTTGTGGAGTGGCTTAGACCCCTTGTGGAGACCAAGGCTTGGGATTACGTAGTTGTTTGGAAATATGGAGAAGATCCATCTAGGTTTATTGAGTGGATGGGTTGCTGTTGTAGAGGGAGTTGCAGTGGAAACATTGAGCAGGTGAAGCCCAAAGAGGAAATGGGTGAACAATACCACTTGGCTCCCATTTGCAGGGATACCCTCTTTCAGCATCCAGTTAGAACAAAGCCTTGTGAAGCTCTTGCCCAGCTTCCTTTCGCAATGTCTCTGTATTCTGGTGTGCATGGAGAGGTTGCAATATCACAACAACCAAGATGGCATACTCGGGAGGATTCAGCTGTAACTCAAGTTTTGATCCCTATTGTTGGTGGTCTCATCGAGCTCTTCACTGCAAAGCTGATTCCAAAAGATATAAATGTCATAGAGTTCATAACATCGCACTGTTGTGTCTCTATAAAGCAAGAAGCCATATCAGCACAGAGCTACACCAGTCTGAACTTCAATGAACATTACACTTTAACTCCTGGTGTCCATCTTCCTGCAGCAAACTGGTGCAGCACCAATCCTACCATTGAAGGACCCTCTGGTGGGTCAAATCCTTTAATTGATCACCCATCATCTGATTCAAAGTTTGTTTGCTTGATTCCTCATGAATATCTGAAGCAATCAATTAAAGTATCTCCTACCCCAAAATCTAAAAAGCCAAAGCACAATGACTCTTCAAGGAAATGGCAGAGAGGTTTGAGTTCCCATTGTGGCAATGGGGAAGAAGATAAAGCAAAATTGATCTGGAAACCTCAAAAGGAAGGTTACCATGCTAAAAATCTTGTCACAGAGAGAAATAGGAGGAACAGAATAAAAAAAGGGCTTTTTACTCTACGATCTTTAGTCCCAAAGATAACCAAGATGGATAGAGCAGCAATTCTTGCAGATGCAATTGACTATATAAAGGAATTGCAGAGGCAAGTGAAAGAACTTAAAGAAGAGGTCAGTGCTTTGGAAGTACAAGACTGTGAGAAGAACACATTACAATTGAGGATGCCAAAAGGCAAAGGACAAGGAGGAACCCCTCTCACAGAGCTTAATGAAGGTTCTTCTGATTGCACCAAAATGACGCAGATAGAGCAGGCAGAAGCAGAAGTGAATCACATTGGCAGGACAGATTTCTTGATTAAGTTATACTGTGAGCAGAAAGAAGGTGGATTTTCAAGGTTGATGGAAGCTATACATTCTCTTGGATTGCATGTGGCTAATGCCAATATGACCACATTTGATGACAAAGTCCTTAACATTTTGACGGTTGAGGCAACTGAGCAGGATATTCACCCAGCGAAACTGAAAGAGTATTTGATACAGCAAACAGGTTGA 1383 0.4223 MGSLGVVEWLRPLVETKAWDYVVVWKYGEDPSRFIEWMGCCCRGSCSGNIEQVKPKEEMGEQYHLAPICRDTLFQHPVRTKPCEALAQLPFAMSLYSGVHGEVAISQQPRWHTREDSAVTQVLIPIVGGLIELFTAKLIPKDINVIEFITSHCCVSIKQEAISAQSYTSLNFNEHYTLTPGVHLPAANWCSTNPTIEGPSGGSNPLIDHPSSDSKFVCLIPHEYLKQSIKVSPTPKSKKPKHNDSSRKWQRGLSSHCGNGEEDKAKLIWKPQKEGYHAKNLVTERNRRNRIKKGLFTLRSLVPKITKMDRAAILADAIDYIKELQRQVKELKEEVSALEVQDCEKNTLQLRMPKGKGQGGTPLTELNEGSSDCTKMTQIEQAEAEVNHIGRTDFLIKLYCEQKEGGFSRLMEAIHSLGLHVANANMTTFDDKVLNILTVEATEQDIHPAKLKEYLIQQTG. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03415 460 SMART finulus 281 330 IPR011598 GO:0046983
Seca11g03415 460 CDD ACT_UUR-ACR-like 395 457 - -
Seca11g03415 460 MobiDBLite consensus disorder prediction 351 370 - -
Seca11g03415 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 341 IPR036638 GO:0046983
Seca11g03415 460 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 457 - -
Seca11g03415 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Seca11g03415 460 Gene3D - 270 342 IPR036638 GO:0046983
Seca11g03415 460 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 151 IPR025610 -
Seca11g03415 460 MobiDBLite consensus disorder prediction 230 259 - -
Seca11g03415 460 Coils Coil 314 341 - -
Seca11g03415 460 Pfam Helix-loop-helix DNA-binding domain 282 325 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03415 Seca-Chr11 81232785 81236096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03415 93 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 28.184 6.39e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g03415 bHLH-MYC_N 3.4e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03415 - - gsj:114423672 630.943