Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03414 ATGGCTCCCAAGCACCCCCCAAACAATGATTCTCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCTCCATCATTAACACAACGCAAAGATTCAAAAAAGAAATCAGGCAAGGGACCTCGTAACAAGGATTCAACTCCATCAGCCAAGCTTCACAATTCAGACTCTTCCGAAAGTAGTGCTCCGTCAGAATCGCCGCCTCGGTCCAAGTTTTTTCCGCCGCCTAAAGGTTTAGCTCCATTGCCACCACCACCACCACCCAAAACACCATCACCACCCCCACCCTCTCCACCACCACCGCCTTCTCCACCACCTCCCTCTCCACCACCACCCTCACCGCGACCTTCACCACCGCCACAGCGCAATGGCAATTCTTCCGCCTCTCCTCTTAGTTATCCACGTAAACAGTCACCGCCTACACCTGAGAGGTCTTCATCTCCGCCACCTTCGCGTAGTGCACCGTCCAATGATTCAAACCATCAAGCCGTGCACGGTGGTGGGTCCCATGCAAAATCAAGGGATTCTTCTCCCGGCTCCTCTCAAGGGGATAATTCAGGAAAATATATTGGCTATACTCTCGCTGGGGTTTTCATTGTTGCCTTAGTTGCTGTAGCTGTAATTTTCACTTTTAGGAGGAAGAAAGCAAAAGGGGATGTCTATGGTGCACCCTACATGCCACCCCCTAATAACTTTCACGTAAGACCAAGTGCTGATGGGAATTATTATGTACAACAGCCTTCCCTTGGAAGGAACTGTGGAAGTGGGAAGATTGGAGGAAGCATGAAGCATCTAGGAGGTCCTTTAGAGTCGGCACAGCCCAAGAGTGCTCAGGTAGCATTTAGTTATGACATGGTTATGGAAATAACTAATTCATTTTGCAATGAAAACGTTATAGGGGAAGGAGGATTCGGGTGTGTTTACAAAGGTTGGCTGCCGGGTGGAAAAGCTGTTGCGGTGAAGCGGCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTCAGGGCTGAAGTGGAAATTATTAGCCGTGTTCATCATCGACATTTGGTATCATTGGTTGGTTATTGCATATCTGAGCAGCAAAGAGTGCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCAGCACTTGCATGGAAGTGGAAGGCCAGTGTTGGATTGGGCCAAGAGGCTGAAGATAGCAATAGGTGCTGCAAAGGGACTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAGTCCGAAAATATACTTTTGGATGATTCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTTGCCGATGCTGCCAATACCCATGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACTGGAAGGAAACCTGTTGATGAAACTCGGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCGCTTCTCCTTCGTGCAGTTGAGACACGTGACTTTGGTGCGCTACTAGACCCAAGACTTGAAAATCACTTCGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGGCTCAGGTGTTAAGAGCCCTAGACAGTGGAGATGAAATATCTGATTTATCAAACGGGGTTAAATATGGTCAGAGCACTGTTTATGATTCTGGGCAGTATGATAGAGACATAGAGCTATTTAGGAGGATGGCCAATGGCAGCTTTGTTGATTCTGATTTTGATATGTACAGTAGAAATTACAGTTTTTCAAGAGAGACGTCTAGATCCCAACATGCGTGGATGTTGAATAGTTCTAGTGGCGAGTCAGAATATAGTGCTTTCAACAAGCATAGGAGCAGTACTGAATGA 1959 0.4701 MAPKHPPNNDSPSPSPSPSSSSPSLTQRKDSKKKSGKGPRNKDSTPSAKLHNSDSSESSAPSESPPRSKFFPPPKGLAPLPPPPPPKTPSPPPPSPPPPPSPPPPSPPPPSPRPSPPPQRNGNSSASPLSYPRKQSPPTPERSSSPPPSRSAPSNDSNHQAVHGGGSHAKSRDSSPGSSQGDNSGKYIGYTLAGVFIVALVAVAVIFTFRRKKAKGDVYGAPYMPPPNNFHVRPSADGNYYVQQPSLGRNCGSGKIGGSMKHLGGPLESAQPKSAQVAFSYDMVMEITNSFCNENVIGEGGFGCVYKGWLPGGKAVAVKRLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRVLIYEYVPNGTLHQHLHGSGRPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSENILLDDSFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETRPLGDESLVEWARPLLLRAVETRDFGALLDPRLENHFVESEMFRMIEAAAACVRHSAPKRPRMAQVLRALDSGDEISDLSNGVKYGQSTVYDSGQYDRDIELFRRMANGSFVDSDFDMYSRNYSFSRETSRSQHAWMLNSSSGESEYSAFNKHRSSTE. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03414 652 FunFam proline-rich receptor-like protein kinase PERK8 367 579 - -
Seca11g03414 652 CDD STKc_IRAK 297 565 - -
Seca11g03414 652 SUPERFAMILY Protein kinase-like (PK-like) 271 564 IPR011009 -
Seca11g03414 652 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Seca11g03414 652 SMART serkin_6 291 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03414 652 MobiDBLite consensus disorder prediction 133 147 - -
Seca11g03414 652 Gene3D Phosphorylase Kinase; domain 1 264 366 - -
Seca11g03414 652 Pfam Protein tyrosine and serine/threonine kinase 294 562 IPR001245 GO:0004672|GO:0006468
Seca11g03414 652 MobiDBLite consensus disorder prediction 41 65 - -
Seca11g03414 652 PRINTS Proline rich extensin signature 89 114 - -
Seca11g03414 652 PRINTS Proline rich extensin signature 7 28 - -
Seca11g03414 652 PRINTS Proline rich extensin signature 71 88 - -
Seca11g03414 652 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 196 616 IPR047117 -
Seca11g03414 652 MobiDBLite consensus disorder prediction 1 182 - -
Seca11g03414 652 Gene3D Transferase(Phosphotransferase) domain 1 367 580 - -
Seca11g03414 652 MobiDBLite consensus disorder prediction 1 19 - -
Seca11g03414 652 ProSiteProfiles Protein kinase domain profile. 291 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03414 652 MobiDBLite consensus disorder prediction 66 121 - -
Seca11g03414 652 MobiDBLite consensus disorder prediction 148 164 - -
Seca11g03414 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Seca11g03414 652 FunFam Proline-rich receptor-like protein kinase PERK8 265 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03414 Seca-Chr11 81227908 81232753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03414 176 618 Trihelix Transcription Factor Family AT1G70460 62.256 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca11g03414 PK_Tyr_Ser-Thr 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03414 - - gmx:100797563 744.962