Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03408 ATGGATGTGGAAAACACGGAAAGTTCTATTGCTAAGGGTATAGAAGATCATGAGAGAATTGATCATGTGTCTCATGAGGCTATTATTGATGAGCAACCTAATCTTTGTCCTAGCATTGGAATGGAATTTGATTCCCTTGAGGATGTTAAAGAGTTATACACATCATTTGCTAAGAAAGCGGGTTTTGGTATTCGTACTCGTTCAACTAAAGAGAATTTTTTTTTACTTGTATGTTCTAATGAAGGCAAGCATATAGTCAAGAATGGTGAGGAAGAGGAATGTAGTGTTGCCATGGGAAAAACAAAGAAAAAGTGCTCAACTTCAAGAACAGATTGTAAGGCGTCCCTTATTGTTTCAAAAGCATGGAAGAGAAGTAAATGGATTATCAAAAGCTTTGATGATGTTCATAATCATGCCATGATCAACCCTAAGAGTGTGAGCTATCTTTGA 450 0.3644 MDVENTESSIAKGIEDHERIDHVSHEAIIDEQPNLCPSIGMEFDSLEDVKELYTSFAKKAGFGIRTRSTKENFFLLVCSNEGKHIVKNGEEEECSVAMGKTKKKCSTSRTDCKASLIVSKAWKRSKWIIKSFDDVHNHAMINPKSVSYL. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03408 149 Pfam FAR1 DNA-binding domain 52 140 IPR004330 -
Seca11g03408 149 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03408 Seca-Chr11 80954619 80955068 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g03408 FAR1 2.4e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03408 - - mtr:112420966 174.866