Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03391 ATGTTGATAATGGAAAATGGTATCGTTCGTGTCACTTTGCAAAGACCGGAGGGCAACGTACTGGCAATATCATATAATGGAATAGATAATGTGCTTGAAGGTCGCAACAAATATAGCAATAGAGGGTATTTTGACGTTGTTTGGAATATACCAGGAAATCGTTCGAATTATTGGGGAATATATGGGAGCAAATTTCCTGTGATAGAGGCAAACGAGAATGAAGTAGAAGTTTCATTTTCAAGAACGTGGGACAATATGAAAGGCGCAAGTCTTCCCTTAAACGTAGACAAGAGGTTCCACTATATGGCTATAGCAGAAGATAGACAGCGAGTGATGCCAACGCCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGTTATAATAACCCAACCTAGTAACCCACAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTATTGAGAACAAAGATAACAATTATCTTCATGGTTGGATTAACTTGGACTCCAACTCCAATGAATCTGTGGGCTTTTGGATGATAACACCAAGTAGCGAGTTTCGTAACGGTGGGCCAACCAACCAAGCCCTTACTTCTCATGTTGGTCCTGTCACTCTCAATGTACGAGATAAACATGGCATTTGCAGAAGAGGGGCCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTCAACAAAGGAGATTCACAAGCCCTCTGGTCCAAGACAGGTACATTAATGGAGGGAGATTTCTTCTATATGGCAATAATGCTTATGTTGGTCTGGCTCTGCCTGGAGATTTGGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAAGATAGGTCACTTCACAATTGAAAACGTCGTACCGGGGGACTACAATTTGTATGCATGGGTTCCTGGCATTGTTGGGGATTACATATATAACACTACTATAACAATCACACCAGGATGTATGATCAAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTAGCATATGGGAAATTGGCATCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGAGTATACATGGGGAAACCAGAACACAAGTTTAGGCAATATGGACTATGGCAGCGTTACACTGAGCTATATCCAAATCAGGACCTCGTTTATAATGTCGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTGCACTGGCCTTACAACATTGAAGTACCTTGCCATCTATTGGTAGAAGGAAACAATATAATCTATCTGAGGCAGGCTAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA 1422 0.4163 MLIMENGIVRVTLQRPEGNVLAISYNGIDNVLEGRNKYSNRGYFDVVWNIPGNRSNYWGIYGSKFPVIEANENEVEVSFSRTWDNMKGASLPLNVDKRFHYMAIAEDRQRVMPTPEDRSTGQRLDYDEAVIITQPSNPQLQGEVDDKYQYSIENKDNNYLHGWINLDSNSNESVGFWMITPSSEFRNGGPTNQALTSHVGPVTLNVRDKHGICRRGAFQESLWPLFCVSQQRRFTSPLVQDRYINGGRFLLYGNNAYVGLALPGDLGSWQRQCKGYQFWTQADKIGHFTIENVVPGDYNLYAWVPGIVGDYIYNTTITITPGCMIKLGSLIFSPPRNGPSIWEIGIQIALLQSFMFQIIILTLSTEYTWGNQNTSLGNMDYGSVTLSYIQIRTSFIMSVLVIIVKIGFMLRLPGQDNAIARHGIHGLHWPYNIEVPCHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLESPGT. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03391 473 Pfam Polysaccharide lyase family 4, domain II 254 326 IPR029413 -
Seca11g03391 473 Gene3D - 257 325 - -
Seca11g03391 473 SUPERFAMILY Galactose-binding domain-like 415 469 IPR008979 -
Seca11g03391 473 CDD RGL4_M 247 330 IPR029413 -
Seca11g03391 473 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 99 - -
Seca11g03391 473 Pfam Polysaccharide lyase family 4, domain III 414 468 IPR029411 -
Seca11g03391 473 SUPERFAMILY Starch-binding domain-like 272 327 IPR013784 GO:0030246
Seca11g03391 473 Pfam Rhamnogalacturonate lyase family 3 99 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03391 Seca-Chr11 79846333 79853450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03391 2 471 Polysaccharide Lyase AT4G38030 35.427 2.90e-110 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03391 K18195 - gmx:100792575 551.977