Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03384 ATGAGCTATCATATTTCTAACACCATTTTAGATTTCTCTTGTTCTAATGTAGTGAAGTTTCTTGGTAAAAGCCCCTTGCTATTACTTCTGCTGTTCAGCACCCTTCATCTTGTGTGTTCCCAAACTTTTGTTCATGATTGTGTCCTTGATATTTATTTTTCTTCAGCCTCAAATGGTTCATATTGTGAATTGTACAATTGGGGAGGGTTTACCAATAGCTGTTGTGGATTAGATTTTGGTAATTACCTATATGCCTTGGGGCTGAAGGCCAACCAAACTGGAAAAATATTCTTGAATTCCTCAGAGCAAAAAAGCTGCTTAGCATCAATGGAAGCTTTTGAGAGAAATTTCACAGGCTGTGGGGTAGAGAAGCTAACAAGTGGAGTTGGTGGATGCTCTGACTACACTATTACAGATGTTATCAACAAGCTTGGAGACAACTTGAGGAAATTGGATGAATATTGCATGCCTTTAAGCATAAATGGCAAGGCAAATGAAACTTGCACTACATGTTGGAAAGCATGGGAGGATATCAGTGCAAGATCAGAGTCAGCAATTCTCAGTACTTATCTTTGTAAGTTTGCTGTGCTTGTCTCACTAACAAGCACAAGAATTTATGAAAGGGAATCAATTCAGGCAGTTTATAAATGCCTTGGGGGACACAGCCTTGCTGCAGATGAGCTAGAAGTTAAGGCTAGGGGCAATGCTAATATCAACCCAGGTCTCTGGATTCTTGCCTTTGGTTTAGCAGGAGTTACAGTAGTAGTTCTTCTTGCTGCTACAATTGCATTGCTTGTCAGAAGAATTAGAAGTGCTCCAACCGTAGAAGATGAGTCTGAGTATTCAACATCACTTAAGATCACTTTGAAGGATGTTTATGTAGCAACTAACAATCTCAGCGCTTCAAATTTCATTGGCCAAGGCATAGCTGGAAAAGTGTACAAAGGTATACTCCCCAATGGGCACTATGTTGCAGTAAAGCATATCATCAAGGAAGGTTATATGGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCCCATGTAAAACACCCAAATCTAGTAGCATTGCTTGGATACTGTGCAAATGAAGCTGAATGCTTCCTAGTGTATGAACTATGCCACCACGGAAAGCTCTCAGATTGGCTATTTGGCAATGATAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGCCATAGATAGCGCACGAGGCCTTGAGTTTCTCCACACCTACCCAGGTGGCTGCATAGTTCACCGTGATATAAAGGTATACACATAG 1278 0.4038 MSYHISNTILDFSCSNVVKFLGKSPLLLLLLFSTLHLVCSQTFVHDCVLDIYFSSASNGSYCELYNWGGFTNSCCGLDFGNYLYALGLKANQTGKIFLNSSEQKSCLASMEAFERNFTGCGVEKLTSGVGGCSDYTITDVINKLGDNLRKLDEYCMPLSINGKANETCTTCWKAWEDISARSESAILSTYLCKFAVLVSLTSTRIYERESIQAVYKCLGGHSLAADELEVKARGNANINPGLWILAFGLAGVTVVVLLAATIALLVRRIRSAPTVEDESEYSTSLKITLKDVYVATNNLSASNFIGQGIAGKVYKGILPNGHYVAVKHIIKEGYMETFVREVRSLSHVKHPNLVALLGYCANEAECFLVYELCHHGKLSDWLFGNDKVLSWIQRLEIAIDSARGLEFLHTYPGGCIVHRDIKVYT. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03384 425 ProSiteProfiles Protein kinase domain profile. 299 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03384 425 Gene3D Phosphorylase Kinase; domain 1 261 372 - -
Seca11g03384 425 Gene3D Transferase(Phosphotransferase) domain 1 374 424 - -
Seca11g03384 425 Pfam Protein tyrosine and serine/threonine kinase 302 421 IPR001245 GO:0004672|GO:0006468
Seca11g03384 425 FunFam Serine/threonine kinase protein 264 372 - -
Seca11g03384 425 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 159 422 - -
Seca11g03384 425 SMART tyrkin_6 299 425 IPR020635 GO:0004713|GO:0006468
Seca11g03384 425 Pfam SPARK 46 182 IPR043891 -
Seca11g03384 425 SUPERFAMILY Protein kinase-like (PK-like) 278 422 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03384 Seca-Chr11 79581450 79585755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03384 245 422 Receptor kinase-like Gene Family AT1G70130 36.612 3.37e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Seca11g03384 SPARK 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03384 - - gsj:114395768 582.022