LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03368	ATGGCTTCTTTTATTCAGTTGTGTTCTTTCCTTTTCCCTTTGTTGTCAACTTCATTTGTTAGAGTTTTTGCCTTTGAAGTTTCAATCAAAGCAACTTTTTTGGCTCCTTTAAATTGCTCTGCAAACATCAGGACATGTGATGCCTTGCTTTACCACATAAACCAAAATCACACTATAGAAGATATTGCTTCTTTTTACTCTGTTAATTCTTCCCAAATCAATCCTATAATGTATGGAACAAGACAAGATTACCTCATAACAGTACCTTGTTCTTGCAAAGACATCAATGACCTTAGCGGATATTTCTATGATACAACCTACAAAGTTAGGCTACATGACTCTTTTGTGAACATTTCAAACCTGATTTATAGTGGCCAAGCCTGGCCAAATAACAGTGTATTGCATCCAGATGAGAATTTAGCAATACATATTCCATGTGGATGTTCAGAAAGTGACTCTCAAATAGTTGTCACCTACACAGTCCAGCAGAATGATACACCAACAACGATTGCTAATCTGCTAAATGCTACACTGGCTGGCATGCTGAGTTTGAATAAAATTCTGGTTCAGAACCCTGGATTCATAGATATTGGTTGGGTTTTATTTGTCCCAAAGGAATTGAAAGGGCTTCCAGTTTCTAACAAAGAAGAAAAGAAGCATAAGTGGACCATAATCATTGGCATCTTAGCGGGAGTGACATTGCTTTCAGTTATTTCAATGATCGTTATCATTTTCAGGAGAAGAAAGAATGCCTATAAAATCAGCAAAGAACATTCACATGCTGTCTCTAGAAGATCAATTGCCAATAGAAATATTTCCTCAAATATCCTTAGCCTTCATAAGGAATATATGGAAGATGTAATGTCACTAGAATCAGACATGCCAGTAATCTATAACCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAATCTCAAATAATTGGAAGCGGTGGATATGGGAGTGTGTATTTTGGAATGTTAGGAAAGAAAGAGGTTGCTGTGAAGAAGATGAGATCTAATAAATCTAAAGAGTTCTATGCAGAACTAAAGGTCTTATGTAAGATCCATCATATCAACATTGTGGAGTTGTTGGGTTATGCCAGCGGAGAAGATCACCTCTATTTGGTGTATGAGTTTGTGTCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTGAAAGGTATTTTGGATACAAGAATTGATATAAGATATATATATATAAATCTAAAGCATGGTTCTCGAACAGGCTACCAGCCTCTTTCTTGGAATTCCAGGGTTCAGATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGATCACACAAAAGCACGATATGTGCACCGAGATATAAAGACTAGCAATATTCTTCTTGATGAGAAGCTAAGAGCCAAGGTAGGAGATTTTGGACTTGCAAAGCTGGTAGACCGAACTAATGATGAAAATTTTATAGCAACAAGGCTTGTTGGGACACCAGGCTACCTTCCACCAGAATCTCTGAAGGAGCTTCAGGTGACCCCAAAAACTGATGTGTTTGCATTTGGAGTGGTCCTGTTAGAACTTTTAACAGGAAAACGTGCACTATTTCGAGAAAGCCAAGAACCCTCCAAAATGAAATCACTTATTACTGTTGTTAATCAAATATTCCAAGATGATGACCCAGAGACTGCTTTGGAAGATGCCGTGGATAAGAATCTTGAAGCCAGCTATCCAATTGAAGATGTCTACAAGATGGCAGAAATAGCTAAGTGGTGCTTGCACGAAGATCCAATGGAAAGGCCTGAAATGAGGGATATCGTTGGGGCACTGTCACAGATTGTGGTGTCATCGATAGAGTGGGAAGCATCACTAGGCGGAAACAGCGAGGTCTTTAGCGGGTTGTATAGTGGAAGATAA	1911	0.3836	MASFIQLCSFLFPLLSTSFVRVFAFEVSIKATFLAPLNCSANIRTCDALLYHINQNHTIEDIASFYSVNSSQINPIMYGTRQDYLITVPCSCKDINDLSGYFYDTTYKVRLHDSFVNISNLIYSGQAWPNNSVLHPDENLAIHIPCGCSESDSQIVVTYTVQQNDTPTTIANLLNATLAGMLSLNKILVQNPGFIDIGWVLFVPKELKGLPVSNKEEKKHKWTIIIGILAGVTLLSVISMIVIIFRRRKNAYKISKEHSHAVSRRSIANRNISSNILSLHKEYMEDVMSLESDMPVIYNLEEIEEATNNFDESQIIGSGGYGSVYFGMLGKKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYASGEDHLYLVYEFVSNGSLSDHLHNPLLKGILDTRIDIRYIYINLKHGSRTGYQPLSWNSRVQIALDAAKGLEYIHDHTKARYVHRDIKTSNILLDEKLRAKVGDFGLAKLVDRTNDENFIATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLLELLTGKRALFRESQEPSKMKSLITVVNQIFQDDDPETALEDAVDKNLEASYPIEDVYKMAEIAKWCLHEDPMERPEMRDIVGALSQIVVSSIEWEASLGGNSEVFSGLYSGR.	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g03368	636	SMART	LysM_2	158	204	IPR018392	-
	Seca11g03368	636	Pfam	LysM domain	159	204	IPR018392	-
	Seca11g03368	636	SMART	serkin_6	310	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03368	636	FunFam	Kinase family protein	286	381	-	-
	Seca11g03368	636	CDD	LysM	157	203	IPR018392	-
	Seca11g03368	636	Pfam	Protein kinase domain	311	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03368	636	ProSiteProfiles	LysM domain profile.	157	203	IPR018392	-
	Seca11g03368	636	ProSitePatterns	Protein kinases ATP-binding region signature.	316	338	IPR017441	GO:0005524
	Seca11g03368	636	Gene3D	Phosphorylase Kinase; domain 1	288	381	-	-
	Seca11g03368	636	ProSiteProfiles	Protein kinase domain profile.	310	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03368	636	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	38	630	IPR044812	GO:0019199\|GO:0045087
	Seca11g03368	636	FunFam	PTI1-like tyrosine-protein kinase 3	382	622	-	-
	Seca11g03368	636	SUPERFAMILY	LysM domain	157	204	IPR036779	-
	Seca11g03368	636	Gene3D	LysM domain	149	209	IPR036779	-
	Seca11g03368	636	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	451	463	IPR008271	GO:0004672\|GO:0006468
	Seca11g03368	636	Gene3D	Transferase(Phosphotransferase) domain 1	383	621	-	-
	Seca11g03368	636	SUPERFAMILY	Protein kinase-like (PK-like)	291	608	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03368	Seca-Chr11	78746645	78751668	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03368	248	636	Receptor kinase-like Gene Family	AT1G51940	44.810	1.01e-110	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Seca11g03368		Pkinase	8.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03368	-		-	gmx:100791718	936.406